Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03262 ATGGCTGGACCATCATGGTTGGTCGATAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTGATCCGAAAAGTATTACATGGAAAAGCAATCCTACCAAGACTTGCCCAAATTGTCAGCATGTTATTGACAATAGTAATCTTGCAAAAGAATGGCCGGGCTTGCCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTTAAAACCTCATCCTTTTGTAGATGAGTTCATTATTACTCTTGAAGTGGATGATGGAATTTGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCATACAATACTGGCACTCGAAAGCGCCGAAAAATACATGATCAGGATTCTGGTGATGTTCGCTGGCACAAAACTGGAAGAACTAAACCTGTAATATTGAATGGAGCTCAAAAAGGCTGTAAAAAGATAATGGTTTTGTATATGAGTACGAGGGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATTTAGGAACAGAAGAGGATGAAAACGATGGCGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAAGATATTCCTGAAGTCACTGAAGATACAATCATAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCCGACCCTCCTCATAATGAAAGGCTGTATTCGGATCATGATATAGGAGATGAAACACTTGCCATTCCTCAGCCTCAGATGGATTGTCCGGATGAAATACAAGCTGATTGTGAAGAGCGTGCAAATGAGGATCTATCAGTGGTAGGAACTGAACATAATGAAGTGACAGATTCACAATATCTGTTAGATTCACAAAATCTGTTAGATTCACAACAACTGGTTGAAGCATTAGCCTTGTGCGACGATTTATTTCATAGCCAATCTCCCACTAGGGATGGGGAACAAGAAGAAAAAAAGAACCAACCTGGTTTTTCTGTTTACGCTCAGCTAGGACCAGAACATCTGAAGAAGGATATCGAAGACTGTCAAAATCTTGTCATTGAGCCTGTAAATCTAGAGCACGACACACCAGCTGCAGAGTTACGACTAAGTCAATTGGAATTTGGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAGGATGTAAGGTAA 1242 0.3977 MAGPSWLVDKSRIATKIKCASGACDPKSITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFIITLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDSGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSTRGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEDTIIKVDPVTPKSVTPDPPHNERLYSDHDIGDETLAIPQPQMDCPDEIQADCEERANEDLSVVGTEHNEVTDSQYLLDSQNLLDSQQLVEALALCDDLFHSQSPTRDGEQEEKKNQPGFSVYAQLGPEHLKKDIEDCQNLVIEPVNLEHDTPAAELRLSQLEFGSQDSFIAWGYNKDVR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03262 413 ProSiteProfiles NAC domain profile. 58 215 IPR003441 GO:0003677|GO:0006355
Trre10g03262 413 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Trre10g03262 413 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 372 IPR044799 GO:0003700
Trre10g03262 413 FunFam NAC domain-containing protein 8 67 219 - -
Trre10g03262 413 SUPERFAMILY NAC domain 43 215 IPR036093 GO:0003677|GO:0006355
Trre10g03262 413 Pfam No apical meristem (NAM) protein 59 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03262 Trre-Chr10 42198975 42202395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03262 14 225 NAC Transcription Factor Family AT1G28470 52.703 8.45e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g03262 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03262 - - gmx:100799488 652.514