Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03261 ATGGCTGGACCATCATGGTTGGTCGATAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTGATCCGAAAAGTATTACATGGAAAAGCAATCCTACCAAGACTTGCCCAAATTGTCAGCATGTTATTGACAATAGTAATCTTGCAAAAGAATGGCCGGGCTTGCCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTTAAAACCTCATCCTTTTGTAGATGAGTTCATTATTACTCTTGAAGTGGATGATGGAATTTGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCATACAATACTGGCACTCGAAAGCGCCGAAAAATACATGATCAGGATTCTGGTGATGTTCGCTGGCACAAAACTGGAAGAACTAAACCTGTAATATTGAATGGAGCTCAAAAAGGCTGTAAAAAGATAATGGTTTTGTATATGAGTACGAGGGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATTTAGGAACAGAAGAGGATGAAAACGATGGCGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAAGATATTCCTGAAGTCACTGAAGATACAATCATAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCCGACCCTCCTCATAATGAAAGGCTGTATTCGGATCATGATATAGGAGATGAAACACTTGCCATTCCTCAGATGGATTGTCCGGATGAAATACAAGCTGATTGTGAAGAGCGTGCAAATGAGGATCTATCAGTGGTAGGAACTGAACATAATGAAGTGACAGATTCACAATATCTGTTAGATTCACAAAATCTGTTAGATTCACAACAACTGGTTGAAGCATTAGCCTTGTGCGACGATTTATTTCATAGCCAATCTCCCACTAGGGATGGGGAACAAGAAGAAAAAAAGAACCAACCTGGTTTTTCTGTTTACGCTCAGCTAGGACCAGAACATCTGAAGAAGGATATCGAAGACTGTCAAAATCTTGTCATTGAGCCTGTAAATCTAGAGCACGACACACCAGCTGCAGAGTTACGACTAAGTCAATTGGAATTTGGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAGGATGTAAGGTAA 1236 0.3964 MAGPSWLVDKSRIATKIKCASGACDPKSITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFIITLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDSGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSTRGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEDTIIKVDPVTPKSVTPDPPHNERLYSDHDIGDETLAIPQMDCPDEIQADCEERANEDLSVVGTEHNEVTDSQYLLDSQNLLDSQQLVEALALCDDLFHSQSPTRDGEQEEKKNQPGFSVYAQLGPEHLKKDIEDCQNLVIEPVNLEHDTPAAELRLSQLEFGSQDSFIAWGYNKDVR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03261 411 ProSiteProfiles NAC domain profile. 58 215 IPR003441 GO:0003677|GO:0006355
Trre10g03261 411 Pfam No apical meristem (NAM) protein 59 196 IPR003441 GO:0003677|GO:0006355
Trre10g03261 411 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 370 IPR044799 GO:0003700
Trre10g03261 411 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Trre10g03261 411 FunFam NAC domain-containing protein 8 67 219 - -
Trre10g03261 411 SUPERFAMILY NAC domain 43 215 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03261 Trre-Chr10 42198975 42202395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03261 14 225 NAC Transcription Factor Family AT1G28470 52.703 6.57e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g03261 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03261 - - gmx:100799488 649.047