Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03260 ATGAAGGCAGCATATGATCCAACAAAAATGAAAGATGTGATTACAAGAAATGAAGAATTCAATCTACATGAGAGAATGGTTGAAGAAAATTGTAGAGTTGATGCTACAAATTCAAAGGAGTCTCTTACTACCTCAAAAAACAACAAAAGAAAATTTGAAGATAATATCTTGAGTAACATTTTTGACAATGATGAAAATGAGGAAGGTATATTTGTTTCACAAACAAAGTCAAAAGGAAAAGCTACAATGTTGGATAATACAATGGTCAATGAACAAAATTCCAACACATGTCACCAGTGCATGAAAAAGGATAGGCTATCATATGCACGTTGTACAAAATGTCGGATATTGTACTGTTTCAAGTGCCTAAGAAAATGGTACCCCAATATGTCATTTGCAGAAATTATAGAGAGGTGCCCCTTGTGTTGTAAGAATTGCAATTGCAATGTTTGTTTGTCTTCAAGAGGAATGATCAAGACATCTAAGAGGAACGTCACAGATGGTGAAAAGGTTCATCATCTTCAATACATGCTCAAATTACTACTTCCATTTGTTCAACAAATTTGTGAAGAACAAAGTCAAGAACAAGAGATTGAAGCACAAATACAAGGAAAATCATGTTTTGAGATTCAAATTCCACAAACTCAATGTTATGATGATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTGTTGACTTTCATAGAAGTTGTGCCAATTGTTCATTCGAAATCTGTCTCAGTTGCTGTAAAGAAATACGCAACGGAAGCATTAAACCACGCCCTGAAATGAAGGTTCAATACATAGATAGAGGCTACGATTACATGTACGGTGGTGATCCTGATCTTCTATATTCAGTGTCTTGTAATGCAAGTAATGCAGAGCATCATGTTCAGATATTCCCTAAATGGAATGCAAAAAGAGATGGAAGTATTGGATGTGCACCAAAAGGACTTGGAGGTTGTGGTGAAAGTGTAATGGAGCTCAAACGTATGCTTCCAGATGGGAGAATACCCAATTTGATAACCAAAGCACACAACATGTTAAAGCATTTTTGCCATATTGAAGATGAACGGAATGTCGAGGAAGCAGTGACAAGTTGTAAAACGGATAACATCATCTACCTTCCAATGTCAAGTGATCTATCGAAAGAAGGTTTATTTAAATTCCAGAAGCATTGGAGGAAAGGTGAGCCAATTATAGTTCGTGACGTTCTTAACCAAGGGACGGGTCTTAGTTGGGACCCGATGGTTACATTTAGAGCCTTGTTTGGAAATTTGGCCTCAAGTGACAACCCAAATGATACATCCGAAATTAAAGCTATTGATTGCTTGTCTGGTTGTGAGGTCGATATTAACACATGCAAGTTCTTAGAAGGTTATAAGGAGGGAAGAAAACATATAATAAACTTATGGCCAGAGATGCTCAAGATAAAAGACTGGCCTCCTTCTGACACGTTTGAAAATGTGTTGCCGCGACATTATGATGAGTTTATTCGTTGCTTGCCGTTTCAAAAGTATTGCGATCCTCAAACTGGAATCCTTAACCTTGCAACGAAGTTACCTCCATGTGTGATAAAGCCCGACTTAGGTCCAAAAACCTATATTGCTTATGGAATCAAAGAAGAACTTGGAAGAGGAGATTCTGTTACAAAACTTCATTGTGATATGGCCGACGCGGTGAATATTTTGACTCATACAACTGAGGTGAAATTAACTGATGACCAATATTCTGCTATTAGAAAAATAAAAAGAGCAAATGAAGCTCAAGATAAGAAAGAGGGTCTTGTTCAAAATAATAGAGGCCCTTTTAAGATTGATGGAAACTATTTTCCAAATGAAGTATCTTCTATCACAAAAGAAACAACAGAAATAGGTGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACCAAAAAGTTAGAAGCATATCTAAGAAAACACTCCAAAGAATTTAGGCATATTTATTGTTCTCCGGTAAAACAGGTTGCTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGAGTAGAACCTTGGACATTTGAGCAGAAACTTGGTGAAGCAGTGTTTATACCTGCTGGATGTCCACACCAAGTTAGAAATCTCAAGTCTTGCACAAAAGTTGCTGTAGATTTTGTGTCACCAGAAAATGTGGATATTTGCATGCAATTAACTGATGAGTTTCGTCGTCTTCCTAAGAATCACAAGGCAAGAGAAGACAAACTTGAGATAAAGAAAATGATAATCTATTCTGTTGACCAAGTTGTTAAAGAATTAGAAGCTTTCATTTGA 2334 0.3659 MKAAYDPTKMKDVITRNEEFNLHERMVEENCRVDATNSKESLTTSKNNKRKFEDNILSNIFDNDENEEGIFVSQTKSKGKATMLDNTMVNEQNSNTCHQCMKKDRLSYARCTKCRILYCFKCLRKWYPNMSFAEIIERCPLCCKNCNCNVCLSSRGMIKTSKRNVTDGEKVHHLQYMLKLLLPFVQQICEEQSQEQEIEAQIQGKSCFEIQIPQTQCYDDERVYCDHCATSIVDFHRSCANCSFEICLSCCKEIRNGSIKPRPEMKVQYIDRGYDYMYGGDPDLLYSVSCNASNAEHHVQIFPKWNAKRDGSIGCAPKGLGGCGESVMELKRMLPDGRIPNLITKAHNMLKHFCHIEDERNVEEAVTSCKTDNIIYLPMSSDLSKEGLFKFQKHWRKGEPIIVRDVLNQGTGLSWDPMVTFRALFGNLASSDNPNDTSEIKAIDCLSGCEVDINTCKFLEGYKEGRKHIINLWPEMLKIKDWPPSDTFENVLPRHYDEFIRCLPFQKYCDPQTGILNLATKLPPCVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHTTEVKLTDDQYSAIRKIKRANEAQDKKEGLVQNNRGPFKIDGNYFPNEVSSITKETTEIGGGALWDIFRREDTKKLEAYLRKHSKEFRHIYCSPVKQVAHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDICMQLTDEFRRLPKNHKAREDKLEIKKMIIYSVDQVVKELEAFI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03260 777 FunFam Transcription factor jumonji domain-containing protein 372 752 - -
Trre10g03260 777 CDD cupin_RmlC-like 667 727 - -
Trre10g03260 777 ProSiteProfiles JmjC domain profile. 511 743 IPR003347 -
Trre10g03260 777 Pfam JmjC domain, hydroxylase 626 726 IPR003347 -
Trre10g03260 777 Gene3D Cupin 368 752 - -
Trre10g03260 777 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 91 162 IPR018866 -
Trre10g03260 777 SUPERFAMILY Clavaminate synthase-like 387 770 - -
Trre10g03260 777 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 774 IPR045109 GO:0032454|GO:0033169
Trre10g03260 777 ProSiteProfiles Zinc finger RING-type profile. 97 142 IPR001841 -
Trre10g03260 777 SMART cupin_9 492 743 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03260 Trre-Chr10 42187846 42191998 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre10g03260 JmjC 8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03260 K15601 - gmx:100801772 946.806