Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03259 ATGGCCACCGTTGCAACAAGAGGAATTGGGGTAACAAACCTCCATAACCAAAAATCACTATTTCTTGGCAACAAACTTAGATTCAAACCTTCAAACAATGAATTCACTGCAAAATTCACTACTTTCTCATCACCAAAAGCTTTTCATGGTGGTGAATGGCTTAACTCAGTTCATAACCTTTTTGTTGGTGTTGGTGTTGGACTTCCATGTACTGTTATGGAGTGTGGAGATATGATTTATAGAAGTACTCTTCCTAGACCTAGTGGTTTGACAGTTACTATTCCTGGTGCTGTTCTTGCTTTTGGTGCTCTTTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGATTGTTCAGACCTACTTTTAGAAAGGATGATTTTGTTCTAGGGAAGAAGCTCGGAGAGGGATCGTTTGGAGTTGTTTATAGAGTCTCACTAGCTAACAAGCCTTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAAGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCCGATTTTGTTTATGGTTTTCTCGAGAGGTCAACAAAGAAGACTCCTGAATATTGGCTTATATGGCGGTTTGAAGGGGATGCCACCTTAGCTGATCTATTACAGAGTAGAGAGTTTCCATACAATGTCGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATAAGGCAACTCTTGTTTGCGTTAGACGGTCTTCACTCAACTGGGATTGTGCATCGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATCAACTACATCCCTAAGGAGTTTCTTTTGGATCCAAGATATGCTGCGCCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCTGTTGCAACTGCACTCTCTCCAGTATTATGGCAGCTGAATCTTCCTGACAGATTCGATATCTACAGTACTGGTCTGATATTTCTCCAAATGGCATTTCCTAATTTACGCACTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTAGAGCCTCGAAGCAGCGCTGAACTTAGGAGGGGCTTTGAGCTCTTGGATTTAGATGGCGGAATAGGATGGGAACTTCTGACATCAATGGTTCGATACAAAGCAAGGCAAAGGCTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCGATTATGCAAAATCTGAGACTTAAGTTCTTTCGAGCAACTCAGCAGGATTATAGCGAAGCTGCCAAGTGGATTATTCAGCTTATGGCTAAATCAGGAACAGAAAAGGATGGGGGATTCACTGAAGCTCAGCTCCAGGAACTTAGAGAAATTTCGCCGAAGAAGAAGGCTGGTGGACAGAGAAATGCTATAGCTTCAGCTCTTAAAGTACAGAGAAAAATCATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGTAGAAACAGGAAAAGCATTTGGTGGAGAAGATGGATCCCAAGAGAGGAATGA 1704 0.4126 MATVATRGIGVTNLHNQKSLFLGNKLRFKPSNNEFTAKFTTFSSPKAFHGGEWLNSVHNLFVGVGVGLPCTVMECGDMIYRSTLPRPSGLTVTIPGAVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSREFPYNVETLILGEVQDLPKGLERENRIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPNLRTDNSLIQFNRQLKRCDYDLVAWRKTVEPRSSAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYSEAAKWIIQLMAKSGTEKDGGFTEAQLQELREISPKKKAGGQRNAIASALKVQRKIIKTLNESMDELSRNRKSIWWRRWIPREE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03259 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Trre10g03259 567 FunFam Serine/threonine-protein kinase STN7, chloroplastic 248 462 - -
Trre10g03259 567 ProSiteProfiles Protein kinase domain profile. 139 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03259 567 SUPERFAMILY Protein kinase-like (PK-like) 124 459 IPR011009 -
Trre10g03259 567 Coils Coil 533 553 - -
Trre10g03259 567 Gene3D Phosphorylase Kinase; domain 1 126 219 - -
Trre10g03259 567 CDD STKc_SNT7_plant 143 457 - -
Trre10g03259 567 Pfam Protein kinase domain 141 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03259 567 Gene3D Transferase(Phosphotransferase) domain 1 248 462 - -
Trre10g03259 567 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 44 542 - -
Trre10g03259 567 SMART serkin_6 139 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03259 567 ProSitePatterns Protein kinases ATP-binding region signature. 145 172 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03259 Trre-Chr10 42160890 42165002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03259 257 458 Core Cell Cycle Gene Families AT2G38620 30.516 8.13e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trre10g03259 Pkinase 4.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03259 - - gmx:100778588 941.799