LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03257	ATGGATGGAGGTAGTTGCATAGATGAAAGCACCACCACGGAATCACTCTCCATAACAATACCACCAACAAAAAAACCGTCAACGCCGCCACCTCCGAACAGCCTATGCCGTGTCGGAAGCTGCGCGAGTGCGGTCGTGGACTCCGATGGCAGCGGCGTTGGAGAAGCCGAGTCACGGAAGCTTTCCTCATCCAAGTACAAAGGCGTGGTGCCTCAACCAAACGGCCGTTGGGGAGCACAGATTTATGAAAAGCATCAACGTGTGTGGCTTGGTACCTTTAACACAGAAGATGAAGCTGCAAGAGCTTACGATGTAGCCGCGCAACGGTTCCGCGGCAAAGACGCCGTAACAAACTTCAAACCTCTCTCTAACGATGACAACGACGACATGGAAGTCGAGTTTCTTAACTCGCATTCCAAGTCGGAGATTGTTGACATGTTAAGAAAACACACATACAATGACGAGTTAGAACAGAGCAAGCGCAGCCGTGGCTTCATCAACAGAAGAAGCCACGGAGACTCTAACTGTTCTAACTTCGCTAGTTTCGCATCCAGCGAAAAAAAGGCGCGTGAGGATCTATTCGAGAAAGTTGTTACTCCGAGCGACGTTGGTAAACTAAACAGGCTAGTTATACCAAAACAGCACGCCGAGAAGCATTTTCCATTACAAAAAGCCGTCGATTGCGGCGCTGAGCGAAGCGTTAGCGCCGCAGCGATGGCAGGGAAGGGAGTTCTTTTAAATTTTGAAGACATTGGAGGGAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGCTACGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACTGGACCGGAAAAGCAGCTTTTTATTGATTGGAAAGCAAGAAAGAATGTTGTCCCGGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCGATGTTAATAATAATGGCAATGCTATTGCTGCTGGGTTTTGTAATAATGGAAAGAGGAGAGAGATGGAAATGTTTACTTTGGAATCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA	1137	0.4688	MDGGSCIDESTTTESLSITIPPTKKPSTPPPPNSLCRVGSCASAVVDSDGSGVGEAESRKLSSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNTEDEAARAYDVAAQRFRGKDAVTNFKPLSNDDNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFINRRSHGDSNCSNFASFASSEKKAREDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGAERSVSAAAMAGKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTGPEKQLFIDWKARKNVVPVGPVVEPVQMVRLFGVNILKLPGSDVNNNGNAIAAGFCNNGKRREMEMFTLESCKKPKIIGAL	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03257	378	Gene3D	AP2/ERF domain	64	121	IPR036955	GO:0003700\|GO:0006355
	Trre10g03257	378	SUPERFAMILY	DNA-binding domain	64	120	IPR016177	GO:0003677
	Trre10g03257	378	ProSiteProfiles	B3 DNA-binding domain profile.	194	310	IPR003340	GO:0003677
	Trre10g03257	378	SMART	rav1_2	65	126	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	MobiDBLite	consensus disorder prediction	1	22	-	-
	Trre10g03257	378	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	PRINTS	Ethylene responsive element binding protein signature	66	77	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	CDD	AP2	64	119	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	Gene3D	-	188	314	IPR015300	-
	Trre10g03257	378	ProSiteProfiles	AP2/ERF domain profile.	65	120	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	SMART	B3_2	194	311	IPR003340	GO:0003677
	Trre10g03257	378	Pfam	AP2 domain	64	112	IPR001471	GO:0003700\|GO:0006355
	Trre10g03257	378	Pfam	B3 DNA binding domain	194	307	IPR003340	GO:0003677
	Trre10g03257	378	FunFam	AP2 domain-containing protein RAP2.8	64	121	-	-
	Trre10g03257	378	SUPERFAMILY	DNA-binding pseudobarrel domain	193	302	IPR015300	-
	Trre10g03257	378	CDD	B3_DNA	193	298	IPR003340	GO:0003677
	Trre10g03257	378	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	60	344	IPR044800	GO:0003700
	Trre10g03257	378	MobiDBLite	consensus disorder prediction	1	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03257	Trre-Chr10	42100691	42101827	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03257	5	378	B3 DNA Binding Superfamily	AT1G25560	57.772	3.12e-134	386

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-RAV	Trre10g03257		B3	3.8e-28	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03257	K09287		-	gmx:100776987	543.888