Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03251 ATGCAAGCTCATACATTCTCCTACATATCCTCAATTCAAACTAATAATGAAACTGTTGATGAGTCTTCCATTTCACTCTCTCTTGGTCCTCCTGGTACACATCACCATAAACCTAAATTATCCTCTTCATCAAATCACTCAGCTACTACTTTTCATCACCATAAGCAAAACTTTACCATTGATGATGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCATATTGGTCTTCCAAATAACACACCTATTAGTAAACCTAATCATCATCATTTGGCTTCAGCTCCTATTCAAAGTCAATATTGGATTCCTTCTCCTGCTCAAATTCTCATTGGACCAACACAGTTCTCTTGTACAGTCTGCAATAAAATGTTCAACCGTTTCAACAATATGCAGATGCATATGTGGGGACATGGGTCACAATACAGGAAAGGGCCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGTTAAGGCTTCCTTGCTATTGCTGTGCTGAGGGATGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAGGATTTTAGGACACTTCAAACACATTACAAGAGGAAGCATGGAGCTAAGCCATTTGGGTGCAGAAAGTGTGGGAAACCCTTTGCAGTGAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGAAAGCTTTGGTTTTGTATTTGTGGATCTGATTTCAAACATAAGAGATCACTCAAAGATCATGTTCGTGCTTTCGGTGATGGTCACGCACCGCACACCGTTGAGAGTTGTGAAGATCAGGATGTTTTGTTAGGTGATGAATATGATGAGGAATTTGAAGGAGATGAAAATGATGAAGATGATGATGATGATAACATTGATGGAATGGTTTTTGGTTTTAATTAA 891 0.3906 MQAHTFSYISSIQTNNETVDESSISLSLGPPGTHHHKPKLSSSSNHSATTFHHHKQNFTIDDDDEQSGVTVALHIGLPNNTPISKPNHHHLASAPIQSQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQDVLLGDEYDEEFEGDENDEDDDDDNIDGMVFGFN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03251 296 MobiDBLite consensus disorder prediction 20 48 - -
Trre10g03251 296 Gene3D Classic Zinc Finger 157 247 - -
Trre10g03251 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Trre10g03251 296 MobiDBLite consensus disorder prediction 270 296 - -
Trre10g03251 296 FunFam Zinc finger protein WIP2 169 251 - -
Trre10g03251 296 SUPERFAMILY beta-beta-alpha zinc fingers 183 220 IPR036236 -
Trre10g03251 296 PANTHER ZINC FINGER PROTEIN WIP2 17 268 IPR043584 GO:0003700|GO:0010468
Trre10g03251 296 MobiDBLite consensus disorder prediction 270 289 - -
Trre10g03251 296 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Trre10g03251 296 SUPERFAMILY beta-beta-alpha zinc fingers 111 136 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03251 Trre-Chr10 42057345 42058747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03251 20 290 C2H2 Transcription Factor Family AT1G13290 64.664 4.08e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g03251 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03251 - - aprc:113870355 463.381