Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03240 ATGGTTCCAATGCAATTCAACCACAAAATGGATTTTCATGACTACATCCAAGCACTACAGGAAGAAAAGAAGAAAATCCAAGTTTTCCCTAGAGACCTTCCTCTTTCTCTCGACCTTGTTACTCAAGCCATTGAAAGGTGTAAGCAACAGTTTTCTGGAATAACGACAGAGTACAATTTGAATCGGGAAACAGAGTGTTCAGAACAGACATCAATGGAAGAAGGTTGTGTTTTAGAGGAGTTTATTCCTATCAAGAAAAGATCATTAACACCTGATTATGATGAAGAAGATGATGATTATGATGAGGAACATTCATCGCGTAAGAAGAAATCTGATTGGCTAAGATCCGTTCAGTTGTGGAATCCTAGCCCACCACCTGCTAAAGAGGAAGTACCTAGGAAAACAAATGTTGTAGAAGTGAAGAAAAGTGGTGGTGCATTTCATCCATTTCACAGAAAGGAAATTGCTGCTGAAAAAGGTAATGCATCAGAAGCATGTAAAGAATCAACCACTTCACCACAAGTACCGGCTACAAGTTCGACTGAACCTGTTGTTGGAACCAGTAGCAAAAGAGAGGATAAAGGACAGAGGAAGCAGCGTCGGTGCTGGTCACAGGAATTGCATAAGCGCTTCTTACACGCCCTTCAACAACTCGGCGGTTCAAATTCTGCCACGCCGAAACAAATAAGAGAACTAATGAAAGTCGATGACCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGCCTGCACACAAGAAGGAGCCCCATAACTCACAACAATGCGAGTTCACAATCAACTCCAATGTTCCTGGTGGGGAACATTTATGTTCAACCACAAGAATATGCTGCAGTAGCTACGACCGCAACAATGTCGGGGGAATTAACCAAAATTACTAGACCAACAGGAATCTATGCACCTGTGGCTATACATCCTCCAACTACAACCACAGTTATAAAGCCAAAGTTTAAGAAATTAGAGTTGAGTGAAAATTCAAATTCTGAAGAAAGGACTAATCATAGTGAAGGCGCTATTGTTCATTCTAACTCCCCTGCATCATCATCTTCCACTCATAACATAACAACTTCCCGTCATTGTTGA 1107 0.411 MVPMQFNHKMDFHDYIQALQEEKKKIQVFPRDLPLSLDLVTQAIERCKQQFSGITTEYNLNRETECSEQTSMEEGCVLEEFIPIKKRSLTPDYDEEDDDYDEEHSSRKKKSDWLRSVQLWNPSPPPAKEEVPRKTNVVEVKKSGGAFHPFHRKEIAAEKGNASEACKESTTSPQVPATSSTEPVVGTSSKREDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDDLTNDEVKSHLQKFRLHTRRSPITHNNASSQSTPMFLVGNIYVQPQEYAAVATTATMSGELTKITRPTGIYAPVAIHPPTTTTVIKPKFKKLELSENSNSEERTNHSEGAIVHSNSPASSSSTHNITTSRHC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03240 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 337 IPR044787 GO:0003700|GO:0006355
Trre10g03240 368 MobiDBLite consensus disorder prediction 330 368 - -
Trre10g03240 368 MobiDBLite consensus disorder prediction 89 112 - -
Trre10g03240 368 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Trre10g03240 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Trre10g03240 368 MobiDBLite consensus disorder prediction 159 201 - -
Trre10g03240 368 Pfam Myb-like DNA-binding domain 200 249 IPR001005 -
Trre10g03240 368 MobiDBLite consensus disorder prediction 330 344 - -
Trre10g03240 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Trre10g03240 368 MobiDBLite consensus disorder prediction 187 201 - -
Trre10g03240 368 MobiDBLite consensus disorder prediction 164 186 - -
Trre10g03240 368 FunFam Myb family transcription factor 197 255 - -
Trre10g03240 368 Gene3D - 197 255 - -
Trre10g03240 368 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03240 Trre-Chr10 41882186 41884107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03240 1 312 G2-like Transcription Factor Family AT1G68670 48.529 2.84e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g03240 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03240 - - gmx:100819750 435.647