Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03230 ATGCAAAGCTTCAAAACAGCTCAATCAAACTCTCAATTCTATTGCCACCAACCCTTCTTGCTTCGGGGAGAAGATATAAACAGAAACCAAATGCGTTTTTCTGATCTTGGTGATTTTCAACATTCTTCTTTCTTTCAACAACAAGATGCTGTTGATTTAAGTTCAAGTTGTATGTTTAGTACTGTAAAGTCGAACAATGTTGTTATTGGTGGTAGTAACATGCAATATGGGACAACAATCAACACGAATGTTGGGTCCGCAGAGATAGCTTCAAATGGCGCAGGGTGTTCGGATGCAGGGCAGCAACAACTGATGTACAACAAGGGAATAGCTTCCTTGCCTTTGGGAAATTGTCATGTTGAGAATTGGGCTGATTCTGGAATGGCAGATAATAGCCAACAGACTGATGATACATCCACTGATATTGATACCGATGATAAAAACCAATCCAATAGAAGAAAGAGTGGAACACATATGGTTGCTCACTCCAAGGATCAGACCAATTTCAGAGCTGAAGATCAAAAGACCCTTCGTAGACTTGCTCAGAATCGTGAGGCGGCAAGGAAGAGCCGGTTACGGAAGAAGGCATATGTACAGCAGCTGGAGAGCAGCCGAGTCAAGCTTATGCAATTAGAGCAAGAGCTACAACGAGCACGTCAACAGGGCATGTTTCATTCAAATCCTGGAGATCAAGGTCATTCAGCTGTTGGAAATGGTGCTTTAGCATTTGACATGGACTATGCTCACTGGGTTGATGAGCATCAACGTCTTCTCAACGATCTAAGATCGGCGTTAAACTCTCAAATGGGTGATAATGAATTGCATCTTCTTGTTGATGGTGTTATGGCACATTATAATGAATTATTTAGGTTAAAGAGCATAGGGGCAAAGGCGGATATATTTCACATGCTTTATGGGCAGTGGAAGACACCGGTAGAAAGATTTTTTATTTGGCACGGTGCATTCCGTTCATCTGAACTTCTCAAGATAGTCAGGAACCACCTCGAGCCATTAACCGAAAATCAGTTGATGGGAATTTGTACTCTTCAGAAGTCTACTCAGCAAACTGAGGATGCTTTATCTCAAGGGATGGAAGTATTGAAACAATCTCTTTTAGAGACACTTTCCTCTACTTCCTCAATACCTAGTACTGGTTCTGGAAATGTAGCTGATTACATGGGTCAAATGGCATTTGCAATGAGCAAGCTTGCATCAATAGAGGAATTCCTTCGTCAGGCTGACCTCTTGAAGCAAGAAACTCTGCAACAGTTACAAAGGATTCTGACGACACGTCAGATTGCTCGGGCACTCCTTGTCAGAAATGATTACATTTCAAGACTACGAGCACTTAGCTCGTTATGGTTAGCACGTCCAAGAGATTAG 1383 0.4208 MQSFKTAQSNSQFYCHQPFLLRGEDINRNQMRFSDLGDFQHSSFFQQQDAVDLSSSCMFSTVKSNNVVIGGSNMQYGTTINTNVGSAEIASNGAGCSDAGQQQLMYNKGIASLPLGNCHVENWADSGMADNSQQTDDTSTDIDTDDKNQSNRRKSGTHMVAHSKDQTNFRAEDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLMQLEQELQRARQQGMFHSNPGDQGHSAVGNGALAFDMDYAHWVDEHQRLLNDLRSALNSQMGDNELHLLVDGVMAHYNELFRLKSIGAKADIFHMLYGQWKTPVERFFIWHGAFRSSELLKIVRNHLEPLTENQLMGICTLQKSTQQTEDALSQGMEVLKQSLLETLSSTSSIPSTGSGNVADYMGQMAFAMSKLASIEEFLRQADLLKQETLQQLQRILTTRQIARALLVRNDYISRLRALSSLWLARPRD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03230 460 SMART brlzneu 171 235 IPR004827 GO:0003700|GO:0006355
Trre10g03230 460 Coils Coil 194 221 - -
Trre10g03230 460 PANTHER TRANSCRIPTION FACTOR TGA9 121 459 - -
Trre10g03230 460 FunFam BZIP family transcription factor 174 223 - -
Trre10g03230 460 ProSiteProfiles DOG1 domain profile. 240 457 IPR025422 GO:0006351|GO:0043565
Trre10g03230 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Trre10g03230 460 Pfam Seed dormancy control 258 332 IPR025422 GO:0006351|GO:0043565
Trre10g03230 460 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Trre10g03230 460 Pfam bZIP transcription factor 174 210 IPR004827 GO:0003700|GO:0006355
Trre10g03230 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Trre10g03230 460 MobiDBLite consensus disorder prediction 124 170 - -
Trre10g03230 460 Gene3D - 174 223 - -
Trre10g03230 460 CDD bZIP_HBP1b-like 175 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03230 Trre-Chr10 41693511 41698008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03230 3 460 bZIP Transcription Factor Family AT1G68640 54.757 7.05e-153 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre10g03230 DOG1 8.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03230 K14431 - gmx:100797393 617.076