Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03222 ATGCCCATTCATCCTCCTCCCATGCTTGTTATTATTCTTAAGATACTATTTTTATTACTCTCTCAAATTTCATATGCAACCGATACTATAACCCAATCTACATCGATTCCCGACGGAAGAAGCTTGATTTCTAATGATGGAACCTTTGAGTTGGGTTTTTTCAGTCCAGGTAGTTCATCAAACCGCTATGTAGGACTTTGGTATAAAAATATCCCAATTCGAAGAGTTGTTTGGGTTGTCAACCGTGACAATCCGATCAAAGACAATTCAAGCAAGTTGATCGTAAGCCGAGATGGAAATCTTGTGCTTCTCAATCAAAATGAGTCTTTCATTTGGTGGTCAACTAACATAACAACAAAGGTTTCAACTTCAAGTCTCGTTGTCCAGCTTTTGGACAACGGGAATTTAGTACTCAGAGATGAAAAAAATAAAAATAGTGGAGACGGTTTTTTGTGGCAGAGTTTTGACTATCCATGTGATACGCTATTAGCGGGAATGAAGATAGGAATCGACAAAAGAACTGGTCTTAATAGACATCTTACTGCATGGAAAAATTGGGACGATCCATCTTCGGGAGACTTTATTAATATTATTGAACTTACTAGCAACCCTGAAGGCATGTTTTGGAAGGGATCAACAAAATACTATAGGACGGGACCATTGATCGGAGCTGAATCTAGGGGTTCGGTCGGATTGAGGGATAATCCAATATATGGTTTTAAATATGCCAACAATGAAAATGAAGTGTATTATATGTTTACAGCCAAGAATATTTCTGTGATCTCTGCAGGTGTTCTAAACCAAACTCTTTCCGTTCGTCAACGTCTTCTTTGGGTACCTGAAACGAGAACATGGAACGTTTACCAATCGTTGCCATTAGATAATTGTGATATTTACAATGTTTGTGGGGCAAATGGATATTGCACAATTGAAGGATCGCAAACATGTCGATGTTTAGATGGATTTAAACCAAAATCATCTGAACAATGGAATACAATGGATTGGAAACAAGGATGTGTACGGAGTGGAAATTGGAGTTGTGGGGTAAAAAATAAAGATGGTTTTCGTAAATTTATTGGGATGAAATTTCCGGATACATCAAATTCTTGGATTAATGCAAACATGACACTTGAAGAATGCAAGACCAAATGCTTAAAGAATTGCTCTTGCACAGGATATACATCCTTAGACCCAATTGGAGAAGGCAAAGGTTGCTCTATCTGGTTGGGTGATCTCATTGATTTAAGATTTTCACAAGACGGACAAGACTTATATGTTCGAATGGATTCCGCATATATTGATGCTAAACATGGAACCCGGAAAAAGGTAATCTTGACGGTTTCGATCACAATTTCAATGGTTCTTGTGATGTTATTGGCATTCTCCTACGTTTATGTAACCAAAGTGAAGTATAAAGTGACAAAAGTAGAAACCATGTTGACAAAAGATGAAGATCAAGGCGAAGATAAGGATTTTGAGCTTCCTATCTTTGACCTAACAACAATATCCAATGCAACCAATAACTTCTCAATTGACAATAAACTCGGCGAAGGTGGTTTTGGACCTGTATATAAGGGTACATTGCAAGATGGTCAAGTAATTGCGGTAAAAAGACTTTCAAGAAATTCAGGACAAGGATCAACAGAATTTAAAAATGAAGTTATATTGTGCACTAAATTGCAACATCGGAATCTTGTTAAAGTTATTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTCTATGAATACATGCCCAATAGAAGTCTTGATTCATTTCTATTTGACCCAGATCAAAGTAAATTTATAGGTTGGTCTATGCGCTTTAACATCTTGAATGCAATTGGTCGAGGACTTCTTTATCTTCATCAAGACTCTATATTACGGATCATACATAGGGATCTGAAAGCAAGTAACATTTTACTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCATGGCAAGAATGTTCGGAGGTGATCAAATCGAAGGGAAGACAAGTAGAATAGTCGGAACATACGGATATATGGCACCTGAATATGTTATTCATGGATTATTCTCTATAAAATCAGATGTATTTTGCTTTGGCGTACTATTGCTAGAAATCATAAGTGGAAAGAAAAATAGAGCACTTACCTACCATGAACATGACCACAATCTTATTTGGCATGCATGGAGATTGTGGAAACAGGACATTGCACATGAACTAATCGATGTTTGTTTAAAAGATTCATATAGTTTACCTGAAGCTTTACGTTGTATTCAAGTTGGTCTCTTATGTGTACAACATGTTCCCGATGATAGGCCAAACATGACAAACGTGCTTATGATGTTGGGTAGTGAAATTACTTTACCTCAACCCAAAGAACCGGGTTTCTTAAATCAAAGAGTCTTTATTGAAGAAAAATCATCTTCTCAAAGTGAAACACCTTCATTGAATGGTGTAACTATGTCACAATTAAATGCTAGATAG 2478 0.366 MPIHPPPMLVIILKILFLLLSQISYATDTITQSTSIPDGRSLISNDGTFELGFFSPGSSSNRYVGLWYKNIPIRRVVWVVNRDNPIKDNSSKLIVSRDGNLVLLNQNESFIWWSTNITTKVSTSSLVVQLLDNGNLVLRDEKNKNSGDGFLWQSFDYPCDTLLAGMKIGIDKRTGLNRHLTAWKNWDDPSSGDFINIIELTSNPEGMFWKGSTKYYRTGPLIGAESRGSVGLRDNPIYGFKYANNENEVYYMFTAKNISVISAGVLNQTLSVRQRLLWVPETRTWNVYQSLPLDNCDIYNVCGANGYCTIEGSQTCRCLDGFKPKSSEQWNTMDWKQGCVRSGNWSCGVKNKDGFRKFIGMKFPDTSNSWINANMTLEECKTKCLKNCSCTGYTSLDPIGEGKGCSIWLGDLIDLRFSQDGQDLYVRMDSAYIDAKHGTRKKVILTVSITISMVLVMLLAFSYVYVTKVKYKVTKVETMLTKDEDQGEDKDFELPIFDLTTISNATNNFSIDNKLGEGGFGPVYKGTLQDGQVIAVKRLSRNSGQGSTEFKNEVILCTKLQHRNLVKVIGCCIEGEEKMLLYEYMPNRSLDSFLFDPDQSKFIGWSMRFNILNAIGRGLLYLHQDSILRIIHRDLKASNILLDNDMNPKISDFGMARMFGGDQIEGKTSRIVGTYGYMAPEYVIHGLFSIKSDVFCFGVLLLEIISGKKNRALTYHEHDHNLIWHAWRLWKQDIAHELIDVCLKDSYSLPEALRCIQVGLLCVQHVPDDRPNMTNVLMMLGSEITLPQPKEPGFLNQRVFIEEKSSSQSETPSLNGVTMSQLNAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03222 825 Pfam Domain of unknown function (DUF3403) 784 825 IPR021820 GO:0004674
Trre10g03222 825 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Trre10g03222 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 189 IPR036426 -
Trre10g03222 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 771 - -
Trre10g03222 825 CDD PAN_AP_plant 346 427 - -
Trre10g03222 825 SMART ntp_6 350 428 IPR003609 -
Trre10g03222 825 ProSiteProfiles PAN/Apple domain profile. 347 429 IPR003609 -
Trre10g03222 825 Gene3D Phosphorylase Kinase; domain 1 483 584 - -
Trre10g03222 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Trre10g03222 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Trre10g03222 825 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Trre10g03222 825 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Trre10g03222 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 155 - -
Trre10g03222 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Trre10g03222 825 SMART blect_4 33 158 IPR001480 -
Trre10g03222 825 SMART serkin_6 509 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03222 825 Pfam PAN-like domain 347 415 IPR003609 -
Trre10g03222 825 CDD STKc_IRAK 515 780 - -
Trre10g03222 825 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03222 825 Pfam D-mannose binding lectin 76 184 IPR001480 -
Trre10g03222 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Trre10g03222 825 Gene3D Transferase(Phosphotransferase) domain 1 585 788 - -
Trre10g03222 825 SUPERFAMILY Protein kinase-like (PK-like) 492 789 IPR011009 -
Trre10g03222 825 CDD B_lectin 35 158 IPR001480 -
Trre10g03222 825 MobiDBLite consensus disorder prediction 803 825 - -
Trre10g03222 825 Gene3D Hepatocyte Growth Factor 346 429 - -
Trre10g03222 825 Gene3D - 21 155 IPR036426 -
Trre10g03222 825 Pfam Protein tyrosine and serine/threonine kinase 510 778 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03222 Trre-Chr10 41646214 41649465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03222 444 794 Receptor kinase-like Gene Family AT4G23230 53.258 3.82e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g03222 PK_Tyr_Ser-Thr 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03222 - - tpra:123904477 1526.92