Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03213 ATGGCTTTGAAAGAGAGATTGGTATCTTCTTCTTCAGAAACGACGTCGTGTGAAGAACGATACGTAAGCTATGAAGAAGTATTCGTATCAATGGATAAGGGTCGGAAAGAGGTTCGGTATTATCTTAAAAAGAAAAACGGTGGTTCGGATCTTGCTCTTATAGGTAAAGAGAAGAATTCGAGACACATGTCTTATCACTATGCAATTAGAAAATCTTCTTTGGCTCCTTTCTTCAAACTCAAATCTCGTAAAGAAGTTCTTGATTGGTTGAATTCAATTATTCAAGATTTTTCTGCCGAGGATCAGAATATGGTTGAGGGAAAGCATGGTTATGAACCTGCTGAGATTGGAACCTTGAAGGATAATCAATTGCCGAAGCTGCGTCTTTGTGCAAAAGAATTTGCTTGGTTAGGGTCACCGTGGATTTGTAAGAAAAGAAGATATCACTATCAGTCATTTAAGCGGAATGGTTTTCAGATATCTGTGAATGATTTTGTGTTTGTTTTAGCAGAAGAGAACAAACATCTGGTTGCCTACTTGGAAGACATGTACGAGGATTCCAGAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTATTGTTTTGCCTCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCCCAGCATTACGAGAAGTATCGGAATGAAGCCTGTCATGCTCGTCCAGAACCATTTGTGTGCAGCAAGAAGTTTGATGATGATGATGTCAAACCGTTTGATATAACTCAGATGAAAGGTTACTGGAAACAGGAAATACTGAGGTCCATGTATCCCCACTCTGACTCAAAGTCTAATGGGAGTTCAGGGCAATCAGGAGATAGCCAAGATCTGGAAGAAAACCTCCATTCTTCTTCTGGGATCAGACCAAAGAAGAAGCAGCGTTTCACAAAAGTTGATGGAAAAGATGCGGTTGATTTCGTCGCCATTCCGTCAGAAAATTTGAGTAATTTTAAGATCGAGGCCAAAACCAGTGGAAACAACTCCTTGAAACTGGGTGGGTCCAGCAAGTTGGCCACCATCAAAGAGACAAATGAAGTTGCTTCACAGTATTTAGCTGTAGGTTCGAAAGTTGAAGTCCTCTCTCAAGACAGTGGGATTAGAGGATGCTGGTTTAGAGCTTCTGTTATCAAGAAGCACAAAGATAAAGTGAAGGTGCGATATGACGACATCCAGGATGCAGATGATGAAGCTAAGAAGCTTGAGGAATGGATTTTAGCTTCTAAAGTTGTGCTGCTTGATGATATGGGTCTGCGAGTACCTGAGAGGACCAAGATCCGGCCTCAGTTAAACAAACGTGGAATGTCGTTTGTGGGTGATGTTGGTTACATTGTTGATGCATGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAGTCTGATATTAAATATCATGTTTATTTCCCAGGCGAAAAGAAGTTGTTAATTTTTGGTCCTAGTAACTTAAGGCATTCTCAAGATTGGACAGGGAATGGATGGGTAAAAGTGAGGGAAAGGCCCGATCTTGTGGCGTCTATATTATCAAGCTTGAAAACAAAACAAAACTTGTGCAAATCTTTTAAGAGGAAATCAACCGTAGCAGCTATGGGAGATGGAATACAATCTAAGCAGGCTGATGCTTTCTTGCTTTCTTCTGAAAGCGATGAACTTCGAAAGGCTGATGTAGTTCCAGATCTTCTGAAGGATGTTTTGTCATCTCGGTTAAGGTGGAAGTCATACCGGAAGAGGAATCAAAGAGGTACCTCTCACCAGAAGCAACAGTCCAACGATAAACACAGGAGATTGTCCCCAAAGTTTCTGGACTCAGATGCAACAGAAAGTTTTGTGATTCCAGCTTCATTGAAAGTTGACCATGATGACTGCAAATACCCCGGAGATCCTTCCATTTTCAGCTCCTCGGTCGTGCCATCTTTAACCAACATGGTCATGTGTAGGTGA 2043 0.4136 MALKERLVSSSSETTSCEERYVSYEEVFVSMDKGRKEVRYYLKKKNGGSDLALIGKEKNSRHMSYHYAIRKSSLAPFFKLKSRKEVLDWLNSIIQDFSAEDQNMVEGKHGYEPAEIGTLKDNQLPKLRLCAKEFAWLGSPWICKKRRYHYQSFKRNGFQISVNDFVFVLAEENKHLVAYLEDMYEDSRGNKMVVVRWFHRIDEVGIVLPHSFSEREVYFSLYLQDLSIECIDGLTSVLSPQHYEKYRNEACHARPEPFVCSKKFDDDDVKPFDITQMKGYWKQEILRSMYPHSDSKSNGSSGQSGDSQDLEENLHSSSGIRPKKKQRFTKVDGKDAVDFVAIPSENLSNFKIEAKTSGNNSLKLGGSSKLATIKETNEVASQYLAVGSKVEVLSQDSGIRGCWFRASVIKKHKDKVKVRYDDIQDADDEAKKLEEWILASKVVLLDDMGLRVPERTKIRPQLNKRGMSFVGDVGYIVDAWWHDGWWEGIVVQKESDIKYHVYFPGEKKLLIFGPSNLRHSQDWTGNGWVKVRERPDLVASILSSLKTKQNLCKSFKRKSTVAAMGDGIQSKQADAFLLSSESDELRKADVVPDLLKDVLSSRLRWKSYRKRNQRGTSHQKQQSNDKHRRLSPKFLDSDATESFVIPASLKVDHDDCKYPGDPSIFSSSVVPSLTNMVMCR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03213 680 MobiDBLite consensus disorder prediction 291 315 - -
Trre10g03213 680 MobiDBLite consensus disorder prediction 609 632 - -
Trre10g03213 680 Pfam Agenet domain 387 461 IPR008395 -
Trre10g03213 680 SMART BAH_4 158 275 IPR001025 GO:0003682
Trre10g03213 680 MobiDBLite consensus disorder prediction 291 329 - -
Trre10g03213 680 CDD Tudor_Agenet_AtDUF_rpt1_3 384 442 - -
Trre10g03213 680 SMART agenet_At_2 469 525 IPR014002 -
Trre10g03213 680 SMART agenet_At_2 382 448 IPR014002 -
Trre10g03213 680 Gene3D - 128 288 IPR043151 -
Trre10g03213 680 ProSiteProfiles BAH domain profile. 158 275 IPR001025 GO:0003682
Trre10g03213 680 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 367 629 - -
Trre10g03213 680 Pfam BAH domain 160 266 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03213 Trre-Chr10 41527955 41531226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03213 394 523 PHD Transcription Factor Family AT5G58610 30.370 1.41e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03213 - - tpra:123911674 1196.03