Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03211 ATGGCTTCATACTTTATGTTCAGTTTCATTTTCTTATTCTGTTATTTTATGCTTCTTCCCTATGCTGAAGCTGAATTGGAATACCATATAAAATGTGAAGAAGAAAAATTTTCCGGTGATCCATATATAGGGGAAATCTCCTTCCCCTACACCAGTACCGACGATAAAAGGGAAAATTGTCGCTTATACATACGTGAATTTGACAACAAGGAAAAAAACCATTACAAAATTGATAGGATCAATTGTATGAACAATTCAATTTTTATCTATACCGAGAGTTACTATGATTTTGATTCAGACTTAGTTAAGAATACATCATGGTTCAGCATTTACACTATATATACCTTCTATGGATGCAATCATGGCGATCACATCCATAAAAACTGTTATGACTACTTCACTCTTAACCCTGATTATCCTGTTGTGCTCACTAATTTTTCATCTCCGTGTCCCCTTCACGGTTGTGCAAAATTAACTTCGTTACTCGAAATTAAAGTAGATTTAGAGTCTTGTAAAGACGATGACTGTTATCCGCCAGATCCAGAAGCTCTAAAATTAATTTGTGGCCCAGCACCAACACCGTTACCTCCTTATTCTAATATTCAAACAAAGCGAAAGGAACCGCGTTTGAAGGCTGCAGTAATAGGTTTATCTATTGGATCGGCAACTGCATTGTTTGTTATTCTTCTTATGTGTTATTGGAGAATCAAATATTCAGAAGTGAAAAACCAATCAAGAACCAATTATCATGGTCTCTCAAGAAATACAACAATCCCGGAAAATGGAGCTGTCTACTTTGGAATCCCTGTCTTCTCGTATGATGAGCTCAAAGAAGCAACAAACAATTTTGATCAAACTAGACAGATTGGAGAAGGTGGCTTCGGGACTATTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCGGTGAAGCGCCTATTCGAGCGCAACTACAGACCAGTAGAATCATTCACGAACGAAATTCAAATCCTCACACGAATGCGTCACAGAAATCTGGTATCCCTTTATGGCTGCACATCGCGCCACAGTCGTGAGTTGCTGCTAGTATACGAATACGTCCCAAATGACACCGTCAGTAGCCATCTCCACGGAGAAAAAGCAAAAAATAACCCATCATTACCATGGGCAGTGAGAATAAAAATAGCCATAGAAACCGCGGGCGCATTGACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTTGACAACAGTTTTTGTGTTAAGGTTGCCGATTTTGGTCTTTCGAGACTATACCCTAATGATGTCACACACGTTTCTACAGCACCGAGAGGAACACCGGGCTATGTTGATCCAGAATATCGCTTATGTTACCAACTGACAGACAAGAGTGATGTATATAGCTTCGGCGTAGTTCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTGACAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCGTAAGGAAGATCCGAAGAAGCGAATTTCATGAGTTGATTGATCCTTCTCTTGGTATTCAGACAGATGAGAGATTAAAAAATATGATAATTTCTGTTGCAGAATTGGCTTTTCAGTGTTTGCAAGATGAGAAAGAATTGAGACCCTCTATGAGTGAAGTATTGGAAGTGCTGCAGAGAATTGAAAGTGGGAAGAATGAGGGAGAGAATAATGAGGTGATTGATTTTCATCATGGAGTAGAAGTAGTACAAAGTTATGCACACCCATCACTTCCAAACACTTGGATGAAGCCACAACGCCATCGACAAACACTTTGA 1812 0.3946 MASYFMFSFIFLFCYFMLLPYAEAELEYHIKCEEEKFSGDPYIGEISFPYTSTDDKRENCRLYIREFDNKEKNHYKIDRINCMNNSIFIYTESYYDFDSDLVKNTSWFSIYTIYTFYGCNHGDHIHKNCYDYFTLNPDYPVVLTNFSSPCPLHGCAKLTSLLEIKVDLESCKDDDCYPPDPEALKLICGPAPTPLPPYSNIQTKRKEPRLKAAVIGLSIGSATALFVILLMCYWRIKYSEVKNQSRTNYHGLSRNTTIPENGAVYFGIPVFSYDELKEATNNFDQTRQIGEGGFGTIYYGKLGDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYVPNDTVSSHLHGEKAKNNPSLPWAVRIKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTDKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAVRKIRRSEFHELIDPSLGIQTDERLKNMIISVAELAFQCLQDEKELRPSMSEVLEVLQRIESGKNEGENNEVIDFHHGVEVVQSYAHPSLPNTWMKPQRHRQTL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03211 603 SMART serkin_6 283 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03211 603 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Trre10g03211 603 FunFam receptor-like protein kinase FERONIA 245 359 - -
Trre10g03211 603 Gene3D Phosphorylase Kinase; domain 1 259 359 - -
Trre10g03211 603 Gene3D Transferase(Phosphotransferase) domain 1 360 582 - -
Trre10g03211 603 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 573 IPR044652 GO:0004672
Trre10g03211 603 FunFam Wall-associated receptor kinase-like 20 360 569 - -
Trre10g03211 603 SUPERFAMILY Protein kinase-like (PK-like) 260 557 IPR011009 -
Trre10g03211 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Trre10g03211 603 Pfam Protein kinase domain 284 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03211 603 ProSiteProfiles Protein kinase domain profile. 283 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03211 603 CDD STKc_IRAK 289 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03211 Trre-Chr10 41513202 41515804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03211 215 591 Receptor kinase-like Gene Family AT1G25390 57.256 4.78e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre10g03211 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03211 - - var:108334729 561.222