LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03208	ATGAGTAGTAATTGTCAAACTTCTGATAATAGTCACAATATCAGGAATTTAATCTCCAACGCTGGTTCTGGTGCTGCTGCTGGGGCAATAGCTGCTACGTTTGTGTGTCCTTTGGATGTGATCAAGACAAGGTTACAGGTTCATGGTCTGCCACCTGTGCAGAAAGGTAGTGTTATTGTCACGAGCTTGCAACATATTGTTCGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACATGTTATGAGCAAATAAAGGGATTGCTTCGATCACATGAGGGTTGCAGCGAACTTACAACTATTGAAAATATTATAGCTGCTGCTGGTGCTGGGGCCGCAACAGCAATATCTACAAATCCATTGTGGGTTGTCAAGACAAGACTACAAACACAAGGAATGAGGCCTAATGTTGTTCCTTACAAGAGTGTTCTTTCCGCTTTGAGAAGGATTACACACGAGGAAGGCCTACGAGGACTATATAGTGGCATTGTACCTTCATTAGCTGGCGTAAGTCATGTAGCAATTCAATTCCCAACGTATGAAAAGATAAAGTTATACATGGCCAAAAGAGATAACACAACTGTCGACAAACTAAGTCCTGGAAATGTTGCTATCGCGTCATCAATTTCAAAAGTAACTGCCTCAGTAATGACTTATCCGCACGAGGTAATACGTTCTCGGCTTCAAGAGCAAGGTCAAGCGAAAACTAGTGGTATTCATTATGCCGGGGTTATTGACTGTACTAAGAAGGTTTTTCAGAAGGAAGGCATCCCAGGATTTTATCGTGGTTGTGCAACTAATCTATTAAGAACAACTCCATCTGCTGTTATCACATTCACCAGTTATGAGATGATACACCGGTTTTTGACACGGAGTATACCACAAAATGAGCCCAACAAACCCAAGCCAGAAGCTAAAAATGGCGATGATACGGATCAATCACCGTCTCAATCTAACAAGATACCTCTCAGAAACAAAGAGCAACTAACAAGACATTGA	1044	0.4224	MSSNCQTSDNSHNIRNLISNAGSGAAAGAIAATFVCPLDVIKTRLQVHGLPPVQKGSVIVTSLQHIVRTEGFRGMYRGLSPTILALLPNWAVYFTCYEQIKGLLRSHEGCSELTTIENIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALRRITHEEGLRGLYSGIVPSLAGVSHVAIQFPTYEKIKLYMAKRDNTTVDKLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGQAKTSGIHYAGVIDCTKKVFQKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLTRSIPQNEPNKPKPEAKNGDDTDQSPSQSNKIPLRNKEQLTRH	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03208	347	MobiDBLite	consensus disorder prediction	325	339	-	-
	Trre10g03208	347	SUPERFAMILY	Mitochondrial carrier	15	299	IPR023395	-
	Trre10g03208	347	MobiDBLite	consensus disorder prediction	305	347	-	-
	Trre10g03208	347	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Trre10g03208	347	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Trre10g03208	347	Gene3D	Mitochondrial carrier domain	1	109	IPR023395	-
	Trre10g03208	347	Gene3D	Mitochondrial carrier domain	110	307	IPR023395	-
	Trre10g03208	347	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Trre10g03208	347	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Trre10g03208	347	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Trre10g03208	347	Pfam	Mitochondrial carrier protein	18	106	IPR018108	-
	Trre10g03208	347	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	17	310	IPR044712	GO:0006862\|GO:0055085
	Trre10g03208	347	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Trre10g03208	347	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Trre10g03208	347	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Trre10g03208	347	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Trre10g03208	347	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Trre10g03208	347	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03208	Trre-Chr10	41476274	41480272	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03208	1	343	Chloroplast and Mitochondria Gene Families	AT1G25380	64.265	5.75e-146	415

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03208	K15115		-	gmx:100816376	538.88