Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03207 ATGGCACAACAACCACCTTCTCCTTCCATTCTACACATAACCATAATCACACTAACATTCCACTTCTTCCTCCTCACTCAAGCCACAAAAAATCCAGATTTCCATCCACTACTTGCATTCAAAATATCTTCAGACACATCTAACAAACTCACTTCATGGAACATTACCACAGACCTATGCACATGGTATGGTGTCTCCTGTCTTAGAAACCGTGTCTCCCGCCTTGTCCTCGAAAACCTTAACCTCCACGGCTCCGTTGAACCGTTAACATCTCTCACTCAACTCCGTGTTCTCAGCCTTAAACGTAACAGTTTCAACGGTCCTATTCCAAATCTTTCCAACCTTACTTCATTAAGACTTCTCTTTCTCTCTTACAATAACTTCTCCGGTGAGTTACCGGAATCACTCACCTCGTTAACCCGCCTATACCGTCTTGATCTTTCCCATAACAATCTCTCCGGTCAGATTCCGGTGAATGTCAACAGTTTGTCTCGCCTCCTCACTCTTCGCCTCGATGGAAACCAAATTGAAGGACACATTCCAAATATAAAACTTTCTTACCTCCAAGACTTTAATGTCTCCGGTAACATTCTCTCTGGTCGAATACCGGAATTACTTTCGGGTTTTCCAGATTCGTCTTTTGCACAAAACCCGTCTCTCTGTGGTACACCATTGCAAAAATGTAAATATGTTCCTGCCTTTGCTTCGTCGTTGGTTCCAACTCCATCTTCTTCGGGTTCAATGCCGGGAAATAAGTCCCATAGAAATGGAGGTCCAGGAATGGGGACTTTGGTCTTAATTACCATTATCCTCGGCGATGTATTAGTACTCGCCATTGTTTCATTGCTTCTCTATTGCTACTTCTGGCGCAACCACTCGAACAAGATGGAGGAAAGAAAAGAAGCAGAGTCAAATTCAAAGAGTTTTGAGAGTGAAAATCAAAAGATGGTTTATGTTGGGGAACAAGGGTTGGAGAAAGGTAATAAAATGGTGTTTTTCGAAGGGGCGAAGAGGTTCGAGTTAGAGGATTTGCTTCGAGCTTCAGCGGAAATGTTGGGGAAAGGTACACTTGGCACTGTCTACAAAGCTGTTCTTGATGATGGAAGTGTTGTAGCTGTGAAGAGATTGAAGGAAGTTCAGATTGGAGGGAAGAGAGAATTCGAGCAGAGAATGGAAGTTCTTGGAAAGTTAAGACATTCCAACATTGTTAGCTTGAAAGCTTATTATTTTGCAAGAGATGAAAAATTGCTTGTCTTTGATTATATGGTTAATGGTAGCTTGTTCTGGCTACTTCATGGTAACCGTGGACCAGGGCGAACCCCACTTGACTGGACCACAAGGCTAAAGATAGCATCTGGAGCAGCACAAGGTGTGGCCTTCATTCACAACCAAAATAATAATCTCACCCACGGTAACATCAAATCCACAAACGTCCTAATCGACGTCTCTGGAAATGCACACGTGGCTGATTTTGGACTCTCAATTTTCACCACTCCATCAAACCGAAGATCAAATGGTTACCGTGCTCCAGAGTCATCAGATGGTCGAAAACAATCCCAAAAGTCTGACGTGTATGCTTTTGGTGTTCTGTTAATGGAGATATTAACAGGTAAGTGTCCCTCCGCCGTAGACGGAGGAACTGAGGTGGAGCTTCCTAAGTGGGTCCAGTCAGTGGTTAGAGAACAATGGACTGCTGAGGTTTTTGATCTTGAGCTGATGAGATTTAAGAATGCTGAGGAGGATATGGTGACGTTGTTGAAGATTGCGTTGACGTGTACTGCGACTGTACCTGATCAACGGCCTAAGATGAGCCATGTAGTTAAGAGGATTGAGGAGTTGCGTGATGTGTCTTCGTGTCATGACACGTTGGATTCGGTTTATGATTCACCTTCTTTGTCCGATGATGCAACCGGAGGTGGAGCTATTCACTAA 1932 0.4374 MAQQPPSPSILHITIITLTFHFFLLTQATKNPDFHPLLAFKISSDTSNKLTSWNITTDLCTWYGVSCLRNRVSRLVLENLNLHGSVEPLTSLTQLRVLSLKRNSFNGPIPNLSNLTSLRLLFLSYNNFSGELPESLTSLTRLYRLDLSHNNLSGQIPVNVNSLSRLLTLRLDGNQIEGHIPNIKLSYLQDFNVSGNILSGRIPELLSGFPDSSFAQNPSLCGTPLQKCKYVPAFASSLVPTPSSSGSMPGNKSHRNGGPGMGTLVLITIILGDVLVLAIVSLLLYCYFWRNHSNKMEERKEAESNSKSFESENQKMVYVGEQGLEKGNKMVFFEGAKRFELEDLLRASAEMLGKGTLGTVYKAVLDDGSVVAVKRLKEVQIGGKREFEQRMEVLGKLRHSNIVSLKAYYFARDEKLLVFDYMVNGSLFWLLHGNRGPGRTPLDWTTRLKIASGAAQGVAFIHNQNNNLTHGNIKSTNVLIDVSGNAHVADFGLSIFTTPSNRRSNGYRAPESSDGRKQSQKSDVYAFGVLLMEILTGKCPSAVDGGTEVELPKWVQSVVREQWTAEVFDLELMRFKNAEEDMVTLLKIALTCTATVPDQRPKMSHVVKRIEELRDVSSCHDTLDSVYDSPSLSDDATGGGAIH 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03207 643 SUPERFAMILY Protein kinase-like (PK-like) 350 610 IPR011009 -
Trre10g03207 643 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre10g03207 643 SUPERFAMILY L domain-like 50 225 - -
Trre10g03207 643 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Trre10g03207 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 617 IPR046959 -
Trre10g03207 643 Pfam Protein kinase domain 349 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03207 643 FunFam Leucine-rich repeat receptor-like protein kinase 30 182 - -
Trre10g03207 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 622 - -
Trre10g03207 643 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03207 643 Gene3D Ribonuclease Inhibitor 25 114 IPR032675 -
Trre10g03207 643 Gene3D Ribonuclease Inhibitor 115 228 IPR032675 -
Trre10g03207 643 FunFam pollen receptor-like kinase 1 315 421 - -
Trre10g03207 643 Coils Coil 292 312 - -
Trre10g03207 643 Gene3D Phosphorylase Kinase; domain 1 310 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03207 Trre-Chr10 41461283 41464907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03207 33 639 Receptor kinase-like Gene Family AT1G68400 61.586 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g03207 Pkinase 2.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03207 - - cam:105851082 821.231