Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03203 ATGGAAGAACAAATCCACAACAATAACAACACTAAAACAATAAACACAAATTCCACTACGTGTTTAAAATTATTTGGTTTTAGTGTCCATGAAGAAAACGATGAAGAATCATCATCACCAGCATCAGCACCAGCACCAGCACCAGCACCAACACCACCACCACCTGGACATGAAGATATAACCGGAAACACTTCACCGTCCGGTTCGACGGAGTCCATCAGCGGAGACGGTGGAGCTTCAAGTTTAAATCCTTCCTCCGGTGACCGGAAATATGAGTGTCAATATTGTTGTAGAGAATTCGCAAATTCACAAGCACTTGGTGGACACCAAAACGCGCATAAAAAAGAACGACAAAAACTCAAACGAGCACAGTTACAAGCATCACGAAACGCTGCCGTTTCGTTTGTTAGAAATCCGATTATCTCCGCTTTTGCACCGCCGCATCATCTTCTCACTTCGCCGGGACAAGTTATGATGCCGACTGCTCCTCCGTCGTGGGTTTACATGCCGCCACGTTCGGCTCCACCTCCTTTCCACGTGTCAGTTTCACACGGTTGTGCTTTTCCGTCTCCGAACAACGGTATTAGTAACTGTAACGGTGGTGGTGGTAACAATAACAATTATAGCTTTATAACAGGTGCAAGATCCGCGAGTGCAGGTGTGTTACCGTGTGTGAGTGGAGTAGGTGATTCATTACCCACATTGTCAACAATGGGCTCACAAGTACAGAGTATGGCCCAGTTTGGGAAACTTGATGGGCCATCTTTGAGTAGGTTCTCTAAAGCAGATGTAGGGCCCAACTTTGATGATGGATTTGGTTTGGATTTGCACCTTAGGCTATCCCCACCATGA 852 0.4601 MEEQIHNNNNTKTINTNSTTCLKLFGFSVHEENDEESSSPASAPAPAPAPTPPPPGHEDITGNTSPSGSTESISGDGGASSLNPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQKLKRAQLQASRNAAVSFVRNPIISAFAPPHHLLTSPGQVMMPTAPPSWVYMPPRSAPPPFHVSVSHGCAFPSPNNGISNCNGGGGNNNNYSFITGARSASAGVLPCVSGVGDSLPTLSTMGSQVQSMAQFGKLDGPSLSRFSKADVGPNFDDGFGLDLHLRLSPP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03203 283 Gene3D Classic Zinc Finger 71 138 - -
Trre10g03203 283 MobiDBLite consensus disorder prediction 43 59 - -
Trre10g03203 283 MobiDBLite consensus disorder prediction 26 85 - -
Trre10g03203 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Trre10g03203 283 SUPERFAMILY beta-beta-alpha zinc fingers 87 118 IPR036236 -
Trre10g03203 283 FunFam Zinc finger protein 6 80 141 - -
Trre10g03203 283 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Trre10g03203 283 PANTHER ZINC FINGER PROTEIN 5 1 282 IPR044299 GO:0010090
Trre10g03203 283 MobiDBLite consensus disorder prediction 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03203 Trre-Chr10 41430457 41431308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03203 18 282 C2H2 Transcription Factor Family AT1G68360 42.701 4.42e-49 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03203 - - tpra:123911684 467.618