Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03179 ATGGAATCTTCTGAAAAGCAAGTTCGCGTTCAAGCTGATTCCGTCAATAAGACATATACAGGGAGTATTTTAACAGTTTTTATTTCATTCACAAAGCTTCCTCATTTGTACAATAACCATATAATGGAGCAGTATAAGGGAGCACCATTTGGAGAGCTCAATACACATGTATTTGCCGTTGCCGATTCATCGTATAGAGCAATGATGAATGAAGGTCGAAGCCAATCTATCTTGGCCAGTGGTGAAAGTAGTGCCGGGAAAACTGAGACAACAAAATTGATTATATGTAGTATCTTACCTTTGTTGTTGGGTGTGCTGTTTCTGATGATAGAATAG 336 0.3839 MESSEKQVRVQADSVNKTYTGSILTVFISFTKLPHLYNNHIMEQYKGAPFGELNTHVFAVADSSYRAMMNEGRSQSILASGESSAGKTETTKLIICSILPLLLGVLFLMIE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03179 111 PRINTS Myosin heavy chain signature 17 36 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre10g03179 111 PRINTS Myosin heavy chain signature 74 99 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre10g03179 111 ProSiteProfiles Myosin motor domain profile. 1 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre10g03179 111 Pfam Myosin head (motor domain) 17 96 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre10g03179 111 Gene3D Kinesin motor domain 5 100 IPR036961 -
Trre10g03179 111 PANTHER MYOSIN 17 95 - -
Trre10g03179 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 106 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03179 Trre-Chr10 41202877 41204054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03179 18 95 Myosins gene family AT4G33200 73.077 1.12e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03179 K10357 - pvy:116135440 130.568