Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03153 ATGTGTAAGCGAAAGGCAAACATGCTAGTAGAATCTGATACTGAAATTAAAAATTCTATGAGTCCCAACATTGGTGACGTCGTTGAAGATGAATCAACAAATTCATCGACAATTTTTTCTTTGTTTCTCCTATTTGGATTCATTATTAATCCTCGTAAGGGAATTCAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCCTTACACCTCAAGCATTAGGCGGCCATCAAAATTCCCACAAATTGGAGAGAAGAATCAAAAGAAGGACCGAAGCTAGTAACCAAGGGGTGGTAAGCCTAAACATTGTGACTCCATACCATGGGGGGTATGGATATCAATATAATGAATTTGACAATATGATTCAGCTTCCAATGTCATCAAATTTTGATGCAAGAAATTTGCTTGTTCCATTGCAGGATATTCCACAGATAGATCAAGTGATCAATGATGCCAATCAAAGCATTGTTAGTCAACAAGCTACTATGACTGAGGTTGACTATGGTTCAATTTCAAATGGGGGTGATGATGTTGATCATGAAGACAAAGACACTCAAGAGGAGAAAGCAATCAAAGATGATTTGATCCTTAAGCTTTGA 600 0.37 MCKRKANMLVESDTEIKNSMSPNIGDVVEDESTNSSTIFSLFLLFGFIINPRKGIQHAYSCNFCSRKFLTPQALGGHQNSHKLERRIKRRTEASNQGVVSLNIVTPYHGGYGYQYNEFDNMIQLPMSSNFDARNLLVPLQDIPQIDQVINDANQSIVSQQATMTEVDYGSISNGGDDVDHEDKDTQEEKAIKDDLILKL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03153 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Trre10g03153 199 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 57 135 IPR044246 GO:0009788
Trre10g03153 199 MobiDBLite consensus disorder prediction 167 186 - -
Trre10g03153 199 Gene3D Classic Zinc Finger 46 103 - -
Trre10g03153 199 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Trre10g03153 199 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03153 Trre-Chr10 41005264 41005863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03153 48 136 C2H2 Transcription Factor Family AT1G80730 35.955 8.74e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03153 - - mtr:120577076 198.749