Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03150 ATGGGTCCACCAACAAATCGCAAACAAAAGTTGTCTTGTATCCCTGAAAGCACAAGAAGATTGAAAGTTATCTATGATGATCCTGATGCAACAGATTCATCATCCGACGAAGCAAATTACGATCCAATGATGAGGAAGAGAGTTGTTCTTGAATTTGCACTCCCTGATGTTTGTGTTAATGAAAGAAAGGTTGATAATGTATTGAACAAGAATAAGAATTCTGCAAAGACAACAACACCTATAGTGAAAGAACAAACATGCAAATACAAAGGTGTTCGAATGAGAAAATGGGGTCGATGGGCTGCTGAAATTCGTAATCCGATTAAAGGTACACGCGAATGGTTAGGAACTTTCAACACTGCTGAAGAGGCTTCGAAAGCGTATGAAACTAAAAAACTTGAATTTGAAGCCATAACTAAGAAGAGTATGTGTAGTAAAGTGAAGAAGAACAACAGCTATAATAGTGTTGTTACCTTTGAGAATATGTTTGCTTCTATGAACGGCGGCTCAAAGAGTGATACTGATACGTCGAATACATCATCTTTGCCCGAATTGGTTAATTCGGTTTCTGATGTGATTAAGAGTGGTAAGGTTTTGATCAATGAAGCTATTGTTGAGAGTCTCGAGACTAATAATCATTTGGAGGGTGAATTTTTGGAACAAAATGATGTGCGCGATTTAAGTCCTTTGAACGTAGTGCAACAACCGGATGTCATTGAGAATTTGGAGACATCTCGGTTGGATTTGGATTGGTTAACATTCGATGGTTCGGGGCAGGGGATGGATGATCTTGGTTGCCTTGACGACCTTCAGTATTGTGATTTTGATGATAACAATGGTCCTATCGATATTCCGGATTTTTATTTTGATGATAACAATGGTCCTTTCGATATTCCGGATTTTAATTTTGACGATATTTGCGCTGATGAGAGTGTTGCTGATGAGATTGCTAGTTGGATTGAAGACATCCCAGATAAACCATGTCCATAA 990 0.3838 MGPPTNRKQKLSCIPESTRRLKVIYDDPDATDSSSDEANYDPMMRKRVVLEFALPDVCVNERKVDNVLNKNKNSAKTTTPIVKEQTCKYKGVRMRKWGRWAAEIRNPIKGTREWLGTFNTAEEASKAYETKKLEFEAITKKSMCSKVKKNNSYNSVVTFENMFASMNGGSKSDTDTSNTSSLPELVNSVSDVIKSGKVLINEAIVESLETNNHLEGEFLEQNDVRDLSPLNVVQQPDVIENLETSRLDLDWLTFDGSGQGMDDLGCLDDLQYCDFDDNNGPIDIPDFYFDDNNGPFDIPDFNFDDICADESVADEIASWIEDIPDKPCP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03150 329 CDD AP2 87 128 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 ProSiteProfiles AP2/ERF domain profile. 88 160 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 SMART rav1_2 88 142 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 Gene3D AP2/ERF domain 87 142 IPR036955 GO:0003700|GO:0006355
Trre10g03150 329 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 Pfam AP2 domain 87 130 IPR001471 GO:0003700|GO:0006355
Trre10g03150 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 137 - -
Trre10g03150 329 SUPERFAMILY DNA-binding domain 88 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03150 Trre-Chr10 40979519 40980508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03150 7 291 AP2-EREBP Transcription Factor Family AT1G68550 36.808 5.85e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre10g03150 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03150 - - tpra:123904484 463.766