Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03140 ATGGTTAAGACAGAGATCAACAAAGAAAAATCAAAGCCAATGCAACAAAAAACATTATTATCATCATCTTCATCATCAGCAACAAATGCATCAAATGAGATGAAGAAAAAGTACAAAGGAGTTAGAATGAGAAGTTGGGGTTCTTGGGTTTCAGAAATTAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCATATTCAACTGCAGAAGCTGCAGCTAGAGCTTATGATGCAGCACTTTTATGCCTTAAAGGTTCATCTGCAACAAATCTTAATTTTCCCTTAGAAATTTCTTCACATTTCATTCCTCAAGATAACACTTCTATGTCACCTAAATCAATTCAAAGAGTAGCTGCTACTGCAGCTGCAGCTGCAGCTGTTGTTAGTAACAATGATATTGCTATTAGCACCCCACCATTTTCTCCACCTAATCATGCTTCAACAACTACTTCATCCTCAAATGTTTCTTCTCCATCAATGTCATCTTCTCCTTCTGATCAAATTGATGATGATGTTTCATTTTTTTCTTCTTTTGGGGTCCACTCTAATTGTGGTGATTATCAAGCAAATGATTCAATGGCTATGATGGATTCTTGGTATGGTTTTGATGGTTTACAATCACCAAAACATGTTGATCAAATGATGCTAAATGGTGCTTTGTTTGATATTGATTCAACTCAAGTACTTCTTGATGATTGGTATGAAGAAAGTGACATTAGTTTGTGGAGCTTCTACTAA 741 0.3522 MVKTEINKEKSKPMQQKTLLSSSSSSATNASNEMKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPLEISSHFIPQDNTSMSPKSIQRVAATAAAAAAVVSNNDIAISTPPFSPPNHASTTTSSSNVSSPSMSSSPSDQIDDDVSFFSSFGVHSNCGDYQANDSMAMMDSWYGFDGLQSPKHVDQMMLNGALFDIDSTQVLLDDWYEESDISLWSFY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03140 246 MobiDBLite consensus disorder prediction 13 33 - -
Trre10g03140 246 FunFam ethylene-responsive transcription factor ERF014-like 36 97 - -
Trre10g03140 246 MobiDBLite consensus disorder prediction 139 167 - -
Trre10g03140 246 Gene3D AP2/ERF domain 36 97 IPR036955 GO:0003700|GO:0006355
Trre10g03140 246 MobiDBLite consensus disorder prediction 1 36 - -
Trre10g03140 246 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trre10g03140 246 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Trre10g03140 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 182 - -
Trre10g03140 246 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Trre10g03140 246 SUPERFAMILY DNA-binding domain 37 97 IPR016177 GO:0003677
Trre10g03140 246 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
Trre10g03140 246 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Trre10g03140 246 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03140 Trre-Chr10 40786164 40786904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03140 38 245 AP2-EREBP Transcription Factor Family AT1G21910 47.727 2.71e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g03140 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03140 - - mtr:11436027 309.686