Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g03138 | ATGTCAATGAACAATGATCAAAGCAGACCATCCAAAAAGTGGTATAAGCTATGCTTTATTCCCACAATTGATGACAGTTCAGATGATTCTGATACCGAATCTGTAGTCATAGCGCGAAGAACTTCAACTCAAACTAGTGTGTGGGAACCTTCTCCGCCACCATCACCGCGGAATCTAGAATCTCAAATAGGCTGGCTTTCTCCACCATTACCACTGCCTCCTCCTCCGCTACCGGATCTGCCTCCACCTCCACCTCCGCTTCCGCATGTGCCTCTGCTACGAACTATGCCTAGTTTTTCACCGTTAGTGCTCCAACGCCGATCTTCACAATCGCAGAGTTCACTATCACCACCATCACCAAATCTAGAACCTGAAGTCAACTGGTATTCTGATTCTGACTATTATCCACCACCATCTCCGCCGCAGCCTTCTTTAAGACCATCATCACCATTAGTTTCGCTACAATTCCAGGCTGCAAATCAAGAACCTCAAATTAATTTGCGGTCTTCAGAACCGCCACCACCACCATCACCACCAAATCCAGAACTTCAAATCAACTGGCATTCTCCACCACCACCGCCACCACCACCTTTTCTTCCATTACCACGAACATTACCAAATCTGGAACCTCAAATCAACTGTGTCATGAATGCCATTCACATGGTGACAATCTCAGAGTTGAATTTAATAGATGAACTCTCTCAATGTCCTATTTGCATGGAAGATTTTAAACTCGGCGATGAAGCATGTCAATTACCTTGCAACCATACATTCAAATTCGAATGTATACTTCGATGGCTTAACAACAGCGAAACATGTCCTGTTTGCAGGCTTCAGTTAAATGGTTTTGAAGGACAAAGTAGTTCTCATAATATCGTCGATGACGATGACGATGATAGTTTGGACCTTGAACCTCCAATTCCAACACAAGTGATTAATAGTTTGGAAGACCATTTTGAATTTTCTGAGGATGGTGCTGCAGGTGACAACTCTGATGAAGGTGAATATGACAGTGCATGTGATGACTTAAATGATAATTGGTTTGGTAATTATCAAAGTAATCATAGTTTACAAATTTAA | 1080 | 0.4259 | MSMNNDQSRPSKKWYKLCFIPTIDDSSDDSDTESVVIARRTSTQTSVWEPSPPPSPRNLESQIGWLSPPLPLPPPPLPDLPPPPPPLPHVPLLRTMPSFSPLVLQRRSSQSQSSLSPPSPNLEPEVNWYSDSDYYPPPSPPQPSLRPSSPLVSLQFQAANQEPQINLRSSEPPPPPSPPNPELQINWHSPPPPPPPPFLPLPRTLPNLEPQINCVMNAIHMVTISELNLIDELSQCPICMEDFKLGDEACQLPCNHTFKFECILRWLNNSETCPVCRLQLNGFEGQSSSHNIVDDDDDDSLDLEPPIPTQVINSLEDHFEFSEDGAAGDNSDEGEYDSACDDLNDNWFGNYQSNHSLQI | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g03138 | 359 | Pfam | Ring finger domain | 235 | 277 | IPR001841 | - | |
| Trre10g03138 | 359 | CDD | RING-H2_PA-TM-RING | 235 | 277 | - | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 67 | 92 | - | - | |
| Trre10g03138 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 292 | IPR013083 | - | |
| Trre10g03138 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 236 | 277 | IPR001841 | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 23 | 150 | - | - | |
| Trre10g03138 | 359 | SMART | ring_2 | 236 | 276 | IPR001841 | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 101 | 126 | - | - | |
| Trre10g03138 | 359 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 105 | 277 | - | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 165 | 202 | - | - | |
| Trre10g03138 | 359 | SUPERFAMILY | RING/U-box | 215 | 281 | - | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 287 | 306 | - | - | |
| Trre10g03138 | 359 | MobiDBLite | consensus disorder prediction | 168 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g03138 | Trre-Chr10 | 40761975 | 40763136 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g03138 | 216 | 281 | C3H Transcription Factor Family | AT1G68180 | 39.394 | 3.76e-12 | 63.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g03138 | - | K11982 | tpra:123908673 | 329.717 |