Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03135 ATGGAGATTGACATAGACATGGTCATGGATGTTGTCCCTGATTTCATTGAATTCTCCAATTTCAGTAACAGCACAACCACACCCACTTCCGATGAAGGCATCACATGGTCCCCTCTTCTCGATTTAGATTTAGATTTCTTCACCACAAACCAAGATGACTTCCACCACTTCATTGATTCCCTCACTAATGATGAAATCATAACCGTTGATGGAAATCTAGACAAAACTATGGCAGAGCAAGATGAAGAAGAAGGATCCATGGGAGACATGTCCAACTCCAACTCCACTAATGAGGAAGATAACGACGGCGAAGATAGAAAGGGCCTCCGTCTTGTGCACCTCCTTATGGCGGCAGCGGAGGCCTTAACCGGCACAAACAAGAGTCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAAGATTTAGTGTCTTCCACTCACGGTACCAACATGGAGAGACTCGCCGCGTATTTCACCGACGCCCTCCAAACTCTACTAAACGGCGCCGATACTGCGCACGGTACCACCACCAACAACCACCACAACAAACTTTGCTTACTCACTGGACCCCACCAAACAGATTTACTATCAGCCTTTCAGCTTCTCCAAGACATGTCTCCTTACGTCAAGTTCGCTCACTTCACGGCTAATCAAGCCATCCTTGAAGCCGTTACTCATGAAAGAAGAGTTCACATAGTTGACTATGATATTATGGAAGGGGCCCAATGGGCTTCATTAATTCAATCACTTTCATCACGTAATGAAGGTCTGTCGGGCCCACACCTTCGCATCACTGCGTTGTCCAGAAATAAAGAACGTGGCAGTGGCCGTAGAACAACCACTGCCACTGTTCAAGAAACTGGACGACGCTTAACATCGTTTGCAGCTTCCGTTGGACAACCGTTTACTTTTCATCAATGTAGGTTGGATTCAGATGAAATATTTAGAGGTTCTTCATTGAAGCTTGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTGATGCATTTGCCACATCTTAGTTATCGTGCCTCAGATTCTATTGCTTCGTTTTTTAATGGTGCGAAAGAATTGGGATCAAAACTTGTTACATTAGTCGAAGAGGAGGTGGGGCCCACTAGTGATGGAGGCTTTGTTGACTTGTTTATGGATTCTTTGCATCGTTATTCAGCTATGTATGATTCGCTTCATGCTGGATTTCCTATGAATAAATGGGCTAGGAGTTTAGTTGAACAAGTGTTTTTGGGCCCAAGAATAATGGGCTCAGTGGCCCAATTATTCATGAATGGTGAGGAGGAGGAGAAAGTGAGGGGTTCTTGGGGGGAGTGGTTGGGTGCGGAGGGGTTTAAGGGAGTTACCATAAGCTATGGTAATCATTGTCAATCGAAGTTGTTGTTAGGTCTATTTAACGATGGTTATAGGGTGGAGGAAATGGGTAACAATAAGTTGGTGTTGGGTTGGAAATCAAGACCTTTGCTTTCAACATCTATTTGGACTTGTATGTCAAAGTCAGAATTTGATTTTTAG 1524 0.4436 MEIDIDMVMDVVPDFIEFSNFSNSTTTPTSDEGITWSPLLDLDLDFFTTNQDDFHHFIDSLTNDEIITVDGNLDKTMAEQDEEEGSMGDMSNSNSTNEEDNDGEDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNMERLAAYFTDALQTLLNGADTAHGTTTNNHHNKLCLLTGPHQTDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDYDIMEGAQWASLIQSLSSRNEGLSGPHLRITALSRNKERGSGRRTTTATVQETGRRLTSFAASVGQPFTFHQCRLDSDEIFRGSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFFNGAKELGSKLVTLVEEEVGPTSDGGFVDLFMDSLHRYSAMYDSLHAGFPMNKWARSLVEQVFLGPRIMGSVAQLFMNGEEEEKVRGSWGEWLGAEGFKGVTISYGNHCQSKLLLGLFNDGYRVEEMGNNKLVLGWKSRPLLSTSIWTCMSKSEFDF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03135 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 494 IPR005202 -
Trre10g03135 507 MobiDBLite consensus disorder prediction 79 105 - -
Trre10g03135 507 ProSiteProfiles GRAS family profile. 102 498 IPR005202 -
Trre10g03135 507 Pfam GRAS domain family 111 498 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03135 Trre-Chr10 40604719 40606242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03135 108 497 GRAS Transcription Factor Family AT3G03450 33.753 2.77e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g03135 GRAS 2.1e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03135 - - cit:102620887 572.392