Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03123 ATGGCTACACCAAAATACAAACTCCTCCTTTCTATCTGTATGTGTGTGATTCTTAACTTGTTGACAACAACAAAAGCAACACCAACTTACACAGCAAGTCACTGCACAAACACAACCTCTTACATACAAAATCCACCCTCCACTTTCCAAACCAATCTCAAGGCCCTCTTATTTTCTTTATCCAATTCTTTATCTCCTGAATATACAACCATTGCCGGTTTCGGCACTTCTCATGCCGTCAACGGACACATCATGTGCCGCGCTGATGTCACCGACACAATCTGCGACGAGTATTTTGCCTTCGACAAGATCGTCCCTAGAGCGAACCTTGATGACGGAAATATTTCCACCCGTGTTAACTTGGGAAACTTCCACGCGTCGTTGGCCGAGTTTCTGGATGATTTAGTTATAGAAGCTATATCGAGTTCTCAGTCGCAAACGTTCGCTTCCGGCGAAGTAGCGGTGCCGGTGACAGAGCCAACGAGGGTATATGGATTGGTGCAGTGTGTGGAAGATTTAACAAGAAGGCAGTGCGAGACATGTTTGAGAAATGGTATTGGAACTCTTCCTTATGGAAAACAGGGCGCAAGAGCTTTGCTTTCGTCTTGTAATGTCAGATACCAACTCTACCCATTTTTAAATCTATATTTGTCACCACCATCTTCAGCGGATAGCAAACTTGGACCTGACAGAATTGTAGTCGTGATCGTGATTGTTGTGCTCATTGCTTTCCTAATTATATTATTTTTGGGTTGCTACTATTTCAAGAGAAGGTCGAAAAAGAAGAGACTAATGCTGATGAGTATGACGGATAATTTTGAGGATGAAATTCCAACATTGGAGTCATTGAAATTCAATTTGACTACTCTTGAAGCAGCAACTAACAAGTTCTCATTAGAGAATAAGATTGGAAGTGGAGGATTTGGACAAGTTTACAAGGGGAATTTGCTAGATGGACGACAAATAACCGTAAAAAAACTTTCAAAAAATTCAGGACAAGGCACGATAGAATTCAAAAATGAGATCGTGCTAATAGCAAAATTGCAACATAGAAATTTAGTAACCTTGTATGGATTTTGCTCTGAGGAACAACAAAAAATGCTTGTTTATGAATATGTACCTAATAAAAGTCTCGATTACTTCTTATTTGATCCTAACAAAGGAAGAGTTTTGAGTTGGCATGAAAGATATAAAATTATAGGCGGAATTGCACGAGGAATTCATTACTTACACGATCAATCAAGACTTAAAGTCATACACCGTGATCTAAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCTGATTTTGGTATGGCTAAAATTATTGATATAGATCAACATCAAGGAAATACAATAAGGATTGCCGGAACTTATGGTTATATGTCTTCTGAATATGCAATGCATGGACATTATTCGGAAAAATCTGATGTGTTTAGCTTTGGGGTCATAATTATAGAGATAATTAGTGCAAAACGGAATTCACTTCGTCTTGATTCACCAGATTTTGATAATCTCTTAAGTTATACTTGGAAAAATTGGAGGGATGGAAAACAGCTAGAAGTATTGGACTCTAATATGGAAAAGTCATTTTCTTACAGTGAAGTTATTAAATGTATTCAAATTGGTTTATTATGTGTGCAACAAAATCCAGATGATAGACCAACAATGGAAAGAGTTGTCTCATATTTGAGTAGTGTTTCAGTGGATTTACCGTTGCCTCAAGAGCCTGCAGGTTTCATGGGTAATAATGGAATGAATCCAAGCATTATACCAAGGGATAGTTCCTCAATCAATGATGTGACCATGAGTCATTTTTCCCCTCGATAA 1842 0.3789 MATPKYKLLLSICMCVILNLLTTTKATPTYTASHCTNTTSYIQNPPSTFQTNLKALLFSLSNSLSPEYTTIAGFGTSHAVNGHIMCRADVTDTICDEYFAFDKIVPRANLDDGNISTRVNLGNFHASLAEFLDDLVIEAISSSQSQTFASGEVAVPVTEPTRVYGLVQCVEDLTRRQCETCLRNGIGTLPYGKQGARALLSSCNVRYQLYPFLNLYLSPPSSADSKLGPDRIVVVIVIVVLIAFLIILFLGCYYFKRRSKKKRLMLMSMTDNFEDEIPTLESLKFNLTTLEAATNKFSLENKIGSGGFGQVYKGNLLDGRQITVKKLSKNSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQQKMLVYEYVPNKSLDYFLFDPNKGRVLSWHERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKIIDIDQHQGNTIRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVIIIEIISAKRNSLRLDSPDFDNLLSYTWKNWRDGKQLEVLDSNMEKSFSYSEVIKCIQIGLLCVQQNPDDRPTMERVVSYLSSVSVDLPLPQEPAGFMGNNGMNPSIIPRDSSSINDVTMSHFSPR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03123 613 Gene3D Phosphorylase Kinase; domain 1 256 372 - -
Trre10g03123 613 Pfam Protein kinase domain 298 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03123 613 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Trre10g03123 613 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 117 609 - -
Trre10g03123 613 Gene3D - 28 100 IPR038408 -
Trre10g03123 613 Gene3D - 108 212 IPR038408 -
Trre10g03123 613 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03123 613 FunFam Cysteine-rich receptor-like protein kinase 10 257 372 - -
Trre10g03123 613 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524
Trre10g03123 613 ProSiteProfiles Protein kinase domain profile. 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03123 613 FunFam cysteine-rich receptor-like protein kinase 10 373 575 - -
Trre10g03123 613 SUPERFAMILY Protein kinase-like (PK-like) 283 601 IPR011009 -
Trre10g03123 613 ProSiteProfiles Gnk2-homologous domain profile. 106 212 IPR002902 -
Trre10g03123 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Trre10g03123 613 Pfam Salt stress response/antifungal 35 97 IPR002902 -
Trre10g03123 613 Pfam Salt stress response/antifungal 122 209 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03123 Trre-Chr10 40398492 40404949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03123 6 604 Receptor kinase-like Gene Family AT4G05200 41.818 9.75e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g03123 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03123 - - mtr:11442717 815.068