Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03120 ATGGATGGGAACCCTAACTCTTCCGAACTTCTCCGCCAAGTTCAAGCAGCTCTCAAACGCCGTCGAAATCCCGGTGGTGCGTTGCAATCAAATATTATACGCCCAAAGCGTTCTGCTGTTGCTGAAGCAAAGGCCATGAACAAATCTGATGATTCTCAAACGAGTTTGGATCAATTAGGGAATGATTCGCTTTCGCTTCGAAAGGGTAATGAAGTTGTTGTTGCTGGAGAGGGGTTCAGTGATGTTAAGGCCAGTGATTTGGAGAACATATCATCTCATTTGGGTTCACTTGCATTGACAGAAATGGAATGTTTGGCAAGCAGCCTTCCTGAAGCATCAAATGGAATCAATCAAGACTTGAAATACAAAACTATTCAGCAGGCAAAGTCTGAAAGAAGCTTGATATCTGAAGGAGGAAAAAGTTCTATGGTGCCAAGGAGAACAATCACTAATCAAGATAATTTGCATAAATTCAAAAACTTTTTAAGCCAACCAGTTACACAATCTTCGGTAGTTGGTCCTTCGTGTGCAACAACTACATCGGTTCATTCAAGTTCAGCTCCCATGCTGAATTCTTTAACTGGTTCTTCTCATTCCCATCCAAATAGTGCCTCAAATTTGGTTACAAAACGCTGTGGGAACCTTAATCCTCATCCAATAACTCATGGGGTTATTAAATCAGCAAATACATCCCTAAAAGAAACCACTAGAATATCAACCGATCAAGCAACTACTGCAGTCCAAGCTTGTAGTTCACTTACTGATGCTGAATTGACGTTTAAGGAGATCAACCCGTGTAAGGAGCAGCAAGAATGCACTTTAAAGGAAACTAGTATTTCGAATCATGCTTCCTATAATGATGATGCATTAACTAAAGGAAAAGAGTCTGCTGTTGCTACCAACACACAACCTGAGGCTCCAACTGTATCTTCAGATGTGAAGTTGGAGTCTTCAAAGTTAGGTAAACCAGATAAATTAGCTGCAAGTTCCAAAGGATTGTCAGGTGCTCGGAAAAGGACCTATGACCCGGATTATTTTTTTAAAGTTAGTGGCAAACTATATCAAAGACTCGGAAGAATAGGTACTGGTGGAAGTAGTGAGGTACACAAAGTGATATCATCAGACTGTACAATCTATGCGCTTAAAAAGATTAAGCTAAAGGGTCGTGATTATGCCACTGCATACGGATTTTGTCAAGAGATTGAGTATCTAAACAGGCTGAAAGGAAAAAGTAATATCATACAGCTTATAGATTATGAGGTGACTGACAAAGCTTTGCTTGAAGGAGTCATGAGTGGCTCCTTCAACAATAAGGATGGTAGAGTCAAGGATGATGGATTTATATACATGGTACTTGAACATGGGGAAATTGACTTGGCTCATATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGTGCAACCAAACCATAGATGAAAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATCCATGAGGAACGTATTGTGCATTCTGACTTGAAGCCTGCAAATTTCCTCCTTGTCAAAGGTTCCCTAAAATTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGATACAACAAATATCCAGCGGGATTCACAGGTTGGTACTTTAAATTATATGTCACCAGAGGCATTTATGTGCAATGAGAGTGATGCGAATGGGAACATCATAAAGTGTGGTCGGCCATCCGATATCTGGTCCTTAGGCTGCATCCTTTATCAAATGGTATATGGAAGAACACCTTTTTCAGATTACAAGACATTTTGGGCCAAAGTCAAGGTCATAACTGATCCAAATCATCAAATTACATATGAACCAGTTTCGAACCCATGGCTCGTCGATCTTATGAAGAAGTGTCTTGCATGGGACCGCAATGAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTATTGCTCCTCCAGTTTCATGTCATCCTTCTTTGTCCCAAGACAATACCTTTAAATGGCTGCAACTTATTGCTGAAACCTGTACATCTGACCAAGAAGCATTGCAGCTATGTTATCAACTACAACAGGTGCTTGGTGACCCCTTTAAGTTGGTAACTCCTCACACAACGAATTCGCGAGACGGACAGCGTAAATTGCTGTCCTGCATATCAGAACTCTGTGTTCAGCTGCATGAAAGATTAACAAATTCTGATAACAAATAA 2199 0.4052 MDGNPNSSELLRQVQAALKRRRNPGGALQSNIIRPKRSAVAEAKAMNKSDDSQTSLDQLGNDSLSLRKGNEVVVAGEGFSDVKASDLENISSHLGSLALTEMECLASSLPEASNGINQDLKYKTIQQAKSERSLISEGGKSSMVPRRTITNQDNLHKFKNFLSQPVTQSSVVGPSCATTTSVHSSSAPMLNSLTGSSHSHPNSASNLVTKRCGNLNPHPITHGVIKSANTSLKETTRISTDQATTAVQACSSLTDAELTFKEINPCKEQQECTLKETSISNHASYNDDALTKGKESAVATNTQPEAPTVSSDVKLESSKLGKPDKLAASSKGLSGARKRTYDPDYFFKVSGKLYQRLGRIGTGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKSNIIQLIDYEVTDKALLEGVMSGSFNNKDGRVKDDGFIYMVLEHGEIDLAHMLSQKWKELDGCNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLNYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPNHQITYEPVSNPWLVDLMKKCLAWDRNERWRIPQLLQHPFIAPPVSCHPSLSQDNTFKWLQLIAETCTSDQEALQLCYQLQQVLGDPFKLVTPHTTNSRDGQRKLLSCISELCVQLHERLTNSDNK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03120 732 FunFam serine/threonine-protein kinase mph1 isoform X2 347 434 - -
Trre10g03120 732 SMART serkin_6 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03120 732 MobiDBLite consensus disorder prediction 43 62 - -
Trre10g03120 732 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Trre10g03120 732 MobiDBLite consensus disorder prediction 295 315 - -
Trre10g03120 732 MobiDBLite consensus disorder prediction 291 317 - -
Trre10g03120 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Trre10g03120 732 Pfam Protein kinase domain 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03120 732 FunFam serine/threonine-protein kinase mph1 isoform X1 468 650 - -
Trre10g03120 732 Gene3D Transferase(Phosphotransferase) domain 1 469 652 - -
Trre10g03120 732 CDD PKc_Mps1 352 646 IPR027084 -
Trre10g03120 732 PANTHER MIXED LINEAGE PROTEIN KINASE 37 678 - -
Trre10g03120 732 MobiDBLite consensus disorder prediction 47 62 - -
Trre10g03120 732 SUPERFAMILY Protein kinase-like (PK-like) 347 665 IPR011009 -
Trre10g03120 732 ProSiteProfiles Protein kinase domain profile. 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03120 732 Gene3D Phosphorylase Kinase; domain 1 347 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03120 Trre-Chr10 40359673 40366228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03120 360 647 MAP Kinase Kinase Kinase AT4G08470 30.169 6.46e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Trre10g03120 Pkinase 3.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03120 K08866 - gmx:100816674 987.638