Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03096 ATGAACTCTTCATCATTATCAACTCAACTAATCGCGCCGAAAACGATGGAAATATATGAGCCATTCCATGAAGTTAGTATGTGGGAGGATAGCTTTAAAGTTGATCATAGCACTCTTAATTCAATTGCTTCACCAATGTTGAAGATGAACATTAGTAGCTTGGAGAACAAGTCTGAATATATTCCTCATGAATCAAGAGAACCATCTGGAGATGATCAAGAAACTACTGAAGAACCTGTTCCTAAGGTGCTAAGACGTCAAGCACAAAATCGCGAGGCTGCTAGGAAATGTCGACTGCGAAAGAAGGCTTATGTTGAACAATTGGAAACAAGTAGATTGAAGCTCATGCAATTAGAACTTGAGATTGAGAAAACAAGAAAACAGGGTTTGTACAAAAGCAATTCATTTGATGTCAATTATATGGGATCATCTGGAATAATAAACTCAGGGATATCTTTATTTGAAATTGAATATGGACGTTGGATTGGATTGCAAGATAGACAAAATGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATTTACAACTTCATCTACTTATTGAGACTAGCTTGAACCAGTATTCAAATCTTTTTAGAATGAAAGCAGAAGCTGCAAAAGCCGATGTTTTCTATTTAATCTCGGGCGCATGGAAATCATCAGTAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGTCCGTCACAGATTCTAAATATCATCGTACCCAAGCTTGAGGCTTTAACTGACCAACAAATTGTGAGCATTAACAACCTCCGATTATCCTCTCAGCAAGCTGAAGATGCTCTTTCAATAGGGTTGGAGAAACTCCAGCAAAGTATGATCCACGACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGATTTCAGATGGCTTCTGCTATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATCCAGGCCGATCACCTTCGGCAACAAGCTTTGTTGTACATGTCTCGTATCTTGACAATCGGGCAATCAGCTAGAGGCTTGTTGGCTATGGGGGAATACTTTCAACGTCTTCGCACTCTTAGTTCGTTGTGGACTGCTCATTCATTCGATCATTTCTACCCTACTCAACACTCAAATTGA 1122 0.3939 MNSSSLSTQLIAPKTMEIYEPFHEVSMWEDSFKVDHSTLNSIASPMLKMNISSLENKSEYIPHESREPSGDDQETTEEPVPKVLRRQAQNREAARKCRLRKKAYVEQLETSRLKLMQLELEIEKTRKQGLYKSNSFDVNYMGSSGIINSGISLFEIEYGRWIGLQDRQNEELRNALQTNASDLQLHLLIETSLNQYSNLFRMKAEAAKADVFYLISGAWKSSVERLFLWIGGSRPSQILNIIVPKLEALTDQQIVSINNLRLSSQQAEDALSIGLEKLQQSMIHDIQADPLDFGNYGFQMASAMDKGEAVEGFVIQADHLRQQALLYMSRILTIGQSARGLLAMGEYFQRLRTLSSLWTAHSFDHFYPTQHSN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03096 373 Gene3D - 82 133 - -
Trre10g03096 373 SMART brlzneu 78 142 IPR004827 GO:0003700|GO:0006355
Trre10g03096 373 MobiDBLite consensus disorder prediction 59 91 - -
Trre10g03096 373 MobiDBLite consensus disorder prediction 58 91 - -
Trre10g03096 373 FunFam BZIP family transcription factor 81 130 - -
Trre10g03096 373 SUPERFAMILY Leucine zipper domain 82 116 IPR046347 GO:0003700|GO:0006355
Trre10g03096 373 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 85 100 IPR004827 GO:0003700|GO:0006355
Trre10g03096 373 Coils Coil 101 128 - -
Trre10g03096 373 PANTHER TRANSCRIPTION FACTOR TGA9 13 362 - -
Trre10g03096 373 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Trre10g03096 373 ProSiteProfiles DOG1 domain profile. 151 361 IPR025422 GO:0006351|GO:0043565
Trre10g03096 373 Pfam Seed dormancy control 170 243 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03096 Trre-Chr10 40049015 40052247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03096 1 369 Calmodulin-binding Proteins AT5G65210 50.134 1.55e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre10g03096 DOG1 9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03096 K14431 - gmx:100775882 529.635