Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03094 ATGAAAGCAGAAGTCGCAAAGGCTGATGTTTTTTATTTAATCTCGGGAACATGGAAAGCGCCGGTTGAACGCCTTTTTCTTTGGATCGGAGGATACCGACCGTCACAGCTTCTAAATATCGCTGTACCGAAGCTTGATGCTTTAACCGATGCACAAATGGTTAGCATTAACAACCTCCGTATATCCACTCTGCAAACTGAAGATGCTCTATCACAAGGGTTAGAAAAGCTCCAGCAAATAATGATAAAAAACATTCAAGCTGATTCTTTGGATTTTGGATACCATGGCTTTCACGTCGCTGCTGCTATTGACAAAGGAGAAGTCGTCGAAAGTTTTGTAAATCAGGCCGATCACCTTAGGCATCAAACTTTGTTGTTCATGTCTCGCATCCTGACAATTGGGCAGGCTGCTCAAGGTTTGCTGGCTATGGGGGAATACTTTCAACGTCTTCGCGCTCTTAGTTCTTTGTGGAATGCACGTTCATGTGATTATTTCTACCCTACTCAGCATTCAACTTAG 519 0.4316 MKAEVAKADVFYLISGTWKAPVERLFLWIGGYRPSQLLNIAVPKLDALTDAQMVSINNLRISTLQTEDALSQGLEKLQQIMIKNIQADSLDFGYHGFHVAAAIDKGEVVESFVNQADHLRHQTLLFMSRILTIGQAAQGLLAMGEYFQRLRALSSLWNARSCDYFYPTQHST 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03094 172 ProSiteProfiles DOG1 domain profile. 1 160 IPR025422 GO:0006351|GO:0043565
Trre10g03094 172 PANTHER TRANSCRIPTION FACTOR TGA9 1 161 - -
Trre10g03094 172 Pfam Seed dormancy control 1 40 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03094 Trre-Chr10 40039045 40040465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03094 1 171 Calmodulin-binding Proteins AT1G22070 54.913 5.30e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03094 K14431 - gmx:100775882 246.514