Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03088 ATGTCTTCTCCTCAACCACGTCCTGTCCACCCTAAAATCTGGCAATCATGTGCCGGCCCCGCCGTTACCATTCCAAAACTTCACTCTAAAGTTTATTACTTCCCACTAGGTCACTTGGAACATGCCTGCCCTTTTCCTAACCCTAACACAATCTCCATGATTGATCAACACCGTCCTTTTATTCCCTGCATCGTCTCCGCCGTTGATCTTCTCTCCGATCCACACACCGATGAGGTATTCGCGAAACTGATCCTAACTCCCATGACTGAAAGCCATGTCCAAGAACCTCCTGTGGTTCCTAACCAAGAAAACGATGGAGACAACGTTGTTTCTTTTATCAAGATGCTAACACAGTCTGATTCTAATAACGGTGGTGGATTCTCCGTACCTCGTGAATGCGCTGATTTAATTTTCCCTAAACTTGACTTCTCGGATCCGATGCCGTCTCAACAACTCTATGTCAATGATGTTCAAGGTAGAACCTGGAAGTACACTCATGTCTATCGTGGGAAACCTAAGAGACACTTGTTCACTACCGGCTGGACTCCGTTTGTTAACGGAAAAAAACTCGTTGCAGGAGATACCGTCGTTTTCTTGAAAAATTCGACCGGGGATGTATTTGTAGGTATCCGTCGGAACATGAAGTTTGCTGCCGCTGAAGCAGCGGCAGCACAGAAGAAGAGGAAGAAGGGGGAGGGTGAAGAGAAGGTTGAGGGTTTTTCAAGGAGTGGGAAAAGAGGGAATGTAACGGAGAACGCGGTTATAGAGGCGGTGGAACGAGCGGAGAAGAATATGGCGTTTGAAGTTGTTTATTATCCGAGTCCAAATTGGACTAATTTTGTGGTGGAAGCTAAGGCTGTAGATGAGGCTATGAAGATTGGATGGGAATCTGGAATGAGAGTTAAGCTTCTTTTGAAGAAAGAGGAATCTTCAAAGAAGCCATTGTCTCAGCCTCAAGGGGCAATCTCAAATGTCTCTATTGTCCTTAAATGGCGCATGCTTAAGGTTAATTGGGATGAATCTGAAATCTCTCAATATCCAAACTGTGTCAATCCTTGGCAAGTTGAGCTTATTTCCCAAGCACCATCATTGTATCTACCATTCCTCCCAACAAAAAGGCCTAGACTTACAGAGACAACAAACCCCTTCATTCCTATGATAGATTTTCCTTATTCAACAATGGGATCCTTCAACCAAACATTGTTGAATTGTGATTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCATTTATCTGCATCAAGTTCTTCCAACTTTTTGAATGGCTATGGTGTTTTTGTGAACAATATAATTGCAGGGTTTGGTACTATGCCAAAAGAACTAAACATTGGAAGTTCTACATCTGTTGATTCGTCGGCTCATAACAACTTCGGGACGAATTTTGTTGAAACTCAAAATGATAATACAGAAGGAGTTAAGCCTAGTTCAATTAAGCTATTTGGTAAGATCATAGACATTGTTGAAAGTGATTTTGATGACTCTGGTATTAAGGGATCAGAATCAGAGGATGGTTCTAATGGATGCAGTGAAATTGAAGGTATTGACAACACTTGCACAACAAATGATCAATAG 1596 0.4273 MSSPQPRPVHPKIWQSCAGPAVTIPKLHSKVYYFPLGHLEHACPFPNPNTISMIDQHRPFIPCIVSAVDLLSDPHTDEVFAKLILTPMTESHVQEPPVVPNQENDGDNVVSFIKMLTQSDSNNGGGFSVPRECADLIFPKLDFSDPMPSQQLYVNDVQGRTWKYTHVYRGKPKRHLFTTGWTPFVNGKKLVAGDTVVFLKNSTGDVFVGIRRNMKFAAAEAAAAQKKRKKGEGEEKVEGFSRSGKRGNVTENAVIEAVERAEKNMAFEVVYYPSPNWTNFVVEAKAVDEAMKIGWESGMRVKLLLKKEESSKKPLSQPQGAISNVSIVLKWRMLKVNWDESEISQYPNCVNPWQVELISQAPSLYLPFLPTKRPRLTETTNPFIPMIDFPYSTMGSFNQTLLNCDSFPAGMQGARHDHLSASSSSNFLNGYGVFVNNIIAGFGTMPKELNIGSSTSVDSSAHNNFGTNFVETQNDNTEGVKPSSIKLFGKIIDIVESDFDDSGIKGSESEDGSNGCSEIEGIDNTCTTNDQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03088 531 Gene3D - 295 363 - -
Trre10g03088 531 FunFam Auxin response factor 110 214 - -
Trre10g03088 531 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 493 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre10g03088 531 MobiDBLite consensus disorder prediction 501 531 - -
Trre10g03088 531 Pfam Auxin response factor 257 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre10g03088 531 MobiDBLite consensus disorder prediction 225 244 - -
Trre10g03088 531 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Trre10g03088 531 CDD B3_DNA 111 212 IPR003340 GO:0003677
Trre10g03088 531 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Trre10g03088 531 MobiDBLite consensus disorder prediction 225 242 - -
Trre10g03088 531 SUPERFAMILY DNA-binding pseudobarrel domain 104 219 IPR015300 -
Trre10g03088 531 Gene3D - 109 214 IPR015300 -
Trre10g03088 531 SMART B3_2 112 214 IPR003340 GO:0003677
Trre10g03088 531 MobiDBLite consensus disorder prediction 508 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03088 Trre-Chr10 39975803 39978297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03088 7 520 B3 DNA Binding Superfamily AT1G77850 38.669 6.83e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre10g03088 B3 4.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03088 - - tpra:123904492 840.106