Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03084 ATGAATACTGCGTTTGACATGCTCGGTTCAGTCAGTCCTGGCAGAAATTCTTGGCGATTTAAGGTTCGTGTTCTTAGGTTATGGAATGCGGCGTCGTTTATGAAACCTGATCAACCAAACTCCATTGAGATGGTTCTTATTGATGAAAAGGGTTCTAAGATTCATGCCTCTGTTCGTCGTCAACTCATCTATGTGTTTGGTGGAAAAATTGCTGAAGGGAAAGTTTATAAGATGTCATACTTCAGTGTTGTTCCTGAATCTGGTTTGTTTCGTTCCACTCAACATCCTTATAAGTTGAAGTTCGAGATGAAGACTAAAGTTCAGATCTGTGAAAATAATTCAATTGATACCTATGGACTATCACTTAGCACTATCGGTGACATATTTGTCTATGGACCTGAACATGATTTTCTAATTGATGTTGCTGCTGTTGTTACTGGTGTTTCCGGTGAAAGGGAGTATATTCGGGATGGAAAAGTTGTCAAAATGGTTCTGCTTGAGTTAACTGATAATAGTGGAAAGTGTGAATGCGCATTTTTCGGTGATTATGTTGATATTCTTCAAGAGATGTTGGTGAATGCTGGTGCTGGACTTCCTATAGTTGTTGTTCAATTTGCAAAAATCAAGATTTTTGCAGGGAAAGTATCCATTCAAAACGTTGTCAATGCTACAAGGATTTTTGTTAATCCTCCAATACCTGAGATTGTCTCTTTGAAAAAAGATTTGGATGTTGATGGTCTTGAATCCGCTGTATCTATTCCTGTACTTGGGCCTAGAGTTGCTACCTCCTTTGAGGATGATTTTCTGCTAAATTTTCCTAAGACTACGCTAGCTAAATTGGTGGGACTTGCTGAGGATGGTATTTATGTGGTTAGCGCTTCTGTGGTTGATTTGGTTGATCCTGAGGAGTGGTGGTATCCAAGTTGTAGGTGTCATAGAAGTCTTACTGCTGACTCCGGGGCTTATTATTGCAAGTTTTGTGTGAAACATGTTTTCAAAATGGTTCCAAGGTTTAGGGTGAAACTCAGGGTTGATGATGGAACATCTGAAGCTGTCTTTGTTGTTTTTGATGCTGATATGCATGTTATGGTTGGCAGACATTGCTTTGAAATGGTTCTTGATTCTAAGGCTAGAGATGCCGGTTTTTATCCTCCTGAATTTGATTTGCTTAAAGGGAAGAAATTTTTGTTTAAAGTTCAGAAAAGTTATTCAGGGGCATTAAGGTTTGATGATTCATATAGAGTGAAAAGGGTGTGCAGTGATGAGGCTATTATCAAAGCTTTTGAAGTTGCTGTGTCTGGAAGTGGTTATGATGGTGATAATGAAGTTAGTGGCGAGGAAGAGTCTGTTCAAAATGCTCAGTCTGTGGATGTTGCTGGTGTTGTAACTATCACACCAAATTTGGCTAAAGGCGATGATGAATTCAGTGATGATGAAGAAATTGTTGTTTCTACTGGTGATTTTGTGAATGAAGTGATCGATTTGGGTGATGACTCTACTAAGGATTTGGATGTATTTCTTCCTGGGCGTGTTGCTTTGGACCCCATGAAAGCTTTCTCTGCCAAAAGGAATCTGTCTGCTGCCTTTGCTGAGTGTGATAACACTGAAGAAAGTACTTCCCAGATTCGTAAACATTCTCAAGGCTGA 1647 0.394 MNTAFDMLGSVSPGRNSWRFKVRVLRLWNAASFMKPDQPNSIEMVLIDEKGSKIHASVRRQLIYVFGGKIAEGKVYKMSYFSVVPESGLFRSTQHPYKLKFEMKTKVQICENNSIDTYGLSLSTIGDIFVYGPEHDFLIDVAAVVTGVSGEREYIRDGKVVKMVLLELTDNSGKCECAFFGDYVDILQEMLVNAGAGLPIVVVQFAKIKIFAGKVSIQNVVNATRIFVNPPIPEIVSLKKDLDVDGLESAVSIPVLGPRVATSFEDDFLLNFPKTTLAKLVGLAEDGIYVVSASVVDLVDPEEWWYPSCRCHRSLTADSGAYYCKFCVKHVFKMVPRFRVKLRVDDGTSEAVFVVFDADMHVMVGRHCFEMVLDSKARDAGFYPPEFDLLKGKKFLFKVQKSYSGALRFDDSYRVKRVCSDEAIIKAFEVAVSGSGYDGDNEVSGEEESVQNAQSVDVAGVVTITPNLAKGDDEFSDDEEIVVSTGDFVNEVIDLGDDSTKDLDVFLPGRVALDPMKAFSAKRNLSAAFAECDNTEESTSQIRKHSQG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03084 548 SUPERFAMILY Nucleic acid-binding proteins 121 247 IPR012340 -
Trre10g03084 548 Gene3D - 274 422 IPR012340 -
Trre10g03084 548 CDD RPA1_DBD_C 282 418 IPR047192 -
Trre10g03084 548 SUPERFAMILY Nucleic acid-binding proteins 282 405 IPR012340 -
Trre10g03084 548 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Trre10g03084 548 CDD RPA1_DBD_B_like 140 243 - -
Trre10g03084 548 PANTHER OS03G0429900 PROTEIN 291 406 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g03084 548 Pfam Replication factor-A C terminal domain 292 402 IPR013955 -
Trre10g03084 548 CDD RPA1_DBD_A_like 21 107 - -
Trre10g03084 548 Gene3D - 5 110 IPR012340 -
Trre10g03084 548 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Trre10g03084 548 Gene3D - 114 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03084 Trre-Chr10 39898444 39900923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03084 8 365 Core DNA Replication Machinery Family AT5G08020 23.670 6.43e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03084 - - tpra:123893724 649.818