Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03053 ATGGGTCGTGTTAAACTTGAGATTAAAAGAATAGAGAACACAACAAATCGACAAGTTACATTTTCAAAGCGAAGAAATGGCCTCATCAAAAAAGCTTATGAGTTATCTATTCTTTGTGATATTGATATTGCCCTAATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCGGGTAAAAAAAGGATAGAGGATGTTTTAACTCGTTACATTAATCTTCCTGACAATGAAAGAGATAATGCTGTAAGTTTTCCAGAGCTACCCTACCGGAGGGGTATTCAGAACAAAGAGTATTTGCTCAGGACGCTTCAACAATTGAGAAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGACATTAACTCTGACATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATGGCAGAGGAGCAAATAAGGATATACGAACCCGAACCCTTAAAGATGGCATCTATGCAAGAGCTTGAAACCAGTGAAAAAAACGTTGTAGAAACTTTGGCACGTGTCATGCAGAGAAAGGAACTTTTATTGAACAACCAGCTATCTTCGTATGATCCATCTGGTATACAGGGAATGCCCACATCATTCGAGAATGTAGGTTGGTTACAGGATGGTAGTCAAAATCATCCCCATATGTTTGATGCATCCGCTCCTTTGGATCCTCTCAGGGATTTATCCTCTACTGTATACGGTTCATTTTCACAAGGGACAACTTCAAATGTTGACCAAAGAGGAATAGGAGAGTGCCACGTGGCAAACCCAAATGATCCAAACCTTCAAGCATGGCCTCAAGGATACACACTATATCCCCATCATCAACAACATCAACAACAACATCATCATATTCAACATGACATGGTTGGAACTGATCATCATCATCATCACCACAATATTCAAGATATGATGCCACATGGACAACAAATGAACATGCCAATTACTGCCTCACAAGTTGAACCACCCAAAAATGAATCAACAGATCAATATGATCAATGTAAACAAACTAATCATCAGCTTCATGCTCAATGA 1050 0.3867 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKKRIEDVLTRYINLPDNERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALHMSNPGDINSDIEELQQEVSRLQQQLQMAEEQIRIYEPEPLKMASMQELETSEKNVVETLARVMQRKELLLNNQLSSYDPSGIQGMPTSFENVGWLQDGSQNHPHMFDASAPLDPLRDLSSTVYGSFSQGTTSNVDQRGIGECHVANPNDPNLQAWPQGYTLYPHHQQHQQQHHHIQHDMVGTDHHHHHHNIQDMMPHGQQMNMPITASQVEPPKNESTDQYDQCKQTNHQLHAQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03053 349 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 FunFam MADS-box transcription factor 41 13 92 - -
Trre10g03053 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 Coils Coil 126 153 - -
Trre10g03053 349 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Trre10g03053 349 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre10g03053 349 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 278 - -
Trre10g03053 349 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 MobiDBLite consensus disorder prediction 324 349 - -
Trre10g03053 349 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre10g03053 349 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03053 Trre-Chr10 39692818 39697114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03053 1 322 Type I MADS-box Gene Family AT1G22130 56.575 2.75e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre10g03053 SRF-TF 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03053 - - pvu:PHAVU_008G170400g 520.005