Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03043 ATGAGTCATCCAGCTGATGAAAATGTTGAAACAAAAGAGATGGATAGTAGAAGTTTGTCTTCTTCACAAGGCCAGGAACCATACGTGCACAAGGTTGGAGTTCCTCCAAAACAAAACCTCTTCAAGGAATTCCAATACACTGTAAAAGAAACATTTTTCTCGGACGATCCTCTACGGCCTTTTAAGGATCAGACGAAGTCCCGGAAGTTCGTCCTGGGAATTGAAGCTATATTCCCTATACTTAGTTGGGGAAGAACTTATAACCTCAAAAAGTTTAGAGGCGATCTTATTGCCGGTTTAACTATTGCAAGTCTCTGCATTCCTCAGGATATTGGATACTCAAAGCTTGCAAATTTGTCTCCTCAGTATGGACTGTATTCAAGCTTTGTTCCACCGCTGATATATGCGGTCATGGGTAGTTCACGTGACATTGCGATAGGACCAGTGGCAGTAGTTTCTCTCTTGTTGGGGACTTTACTCCAGAATGAGATTGATCCCAATACACATCCAACGGAATATAGAAGACTCGCTTTTACTGCCACGTTTTTTGCTGGGATTACACAGACAACTCTTGGAGTTTTTAGGTTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTCGGTTTTATGGGGGGAGCTGCCATCACAATTGCTCTTCAACAGCTTAAGGGTTTCCTTGGGATTGAAAAGTTCACAAGGAAAACCGATATAATCTCTGTGATGCATTCAGTATTCTCATCAGCTCATCATGGATGGAACTGGCAAACTATATTAATTGGATCTACCTTTCTTTCTTTTCTTCTGTTTGCCAAGTATATCGGAAAGAAGGGCCAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCTGTTGTACTCTCCACTTTATTTGTATACATAACCCGTGCAGACAAACACGGTGTTGCAATTGTAAAACACATAGAGAAAGGGATAAATCCATCCTCCGTGAAGGAAATTTATTTTACTGGTGACTACCTTGCGAAAGGTGTTAGAATTGGTATTGTGGCTGGCATGATAGCTTTAACTGAAGCCATAGCAATTGGAAGAACATTTGCGTCTATGAAGGACTATCAACTGGATGGCAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTAGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAATTACATGGCTGGCTGCGAAACTGCGGTCTCTAATATTGTCATGTCTGTTGTTGTGTTCTTAACCCTTCAATTTTTCACGCCTCTTTTCAAATACACTCCAAATGCCATTCTTGCTTCAATCATCATTTGCGCCGTCATCAACCTTGTAGACTATAAGGCAGCAATTTTGATATGGAAAATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTTGTTTTTGCCTCGGTTGAGATAGGACTTTTGATTGCTGTTTCTATATCCTTTGCAAAAATCCTATTGCAAGTCACAAGGCCTCGAACTGCTATTCTGGGGAAGATCCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCAGAGGCAACAAGGGTTCCTGGTGTACTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCTAATTATGTTAAAGAAAGGATACTAAGATGGCTTATGGATGAGGAAGAACGAGTGAATAGAGACTATCAAACTCGAATCCAGTTTTTGATAGTTGAGATGTCACCTGTTACCGACATTGATACCAGTGGCATCCATGCCCTGGAAGAGTTATTTAGAAGTCTTCAGAAGAGAGAGGTTCAGCTTGTTCTTGCAAATCCTGGTCCACTAGTGATAGACAAACTCCACACATCAAACTTTGCAAATTTTCTTGGTGAAGACAAGATCTTCCTCACTGTTGCTGAGGCTGTTGCATACTGTTCTCCAAAGCTGGCTGAGGAACCTTGA 1968 0.4075 MSHPADENVETKEMDSRSLSSSQGQEPYVHKVGVPPKQNLFKEFQYTVKETFFSDDPLRPFKDQTKSRKFVLGIEAIFPILSWGRTYNLKKFRGDLIAGLTIASLCIPQDIGYSKLANLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQNEIDPNTHPTEYRRLAFTATFFAGITQTTLGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIEKFTRKTDIISVMHSVFSSAHHGWNWQTILIGSTFLSFLLFAKYIGKKGQKFFWVPAIAPLISVVLSTLFVYITRADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMAGCETAVSNIVMSVVVFLTLQFFTPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQLVLANPGPLVIDKLHTSNFANFLGEDKIFLTVAEAVAYCSPKLAEEP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03043 655 FunFam Sulfate transporter 31 504 650 - -
Trre10g03043 655 Pfam STAS domain 525 643 IPR002645 -
Trre10g03043 655 CDD STAS_SulP_like_sulfate_transporter 525 640 - -
Trre10g03043 655 ProSiteProfiles STAS domain profile. 524 647 IPR002645 -
Trre10g03043 655 Gene3D STAS domain 504 651 IPR036513 -
Trre10g03043 655 MobiDBLite consensus disorder prediction 1 29 - -
Trre10g03043 655 Pfam Sulfate permease family 92 472 IPR011547 GO:0016020
Trre10g03043 655 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Trre10g03043 655 NCBIfam sulfate permease 79 643 IPR001902 GO:0016020|GO:0055085
Trre10g03043 655 PANTHER SULFATE TRANSPORTER 38 648 IPR001902 GO:0016020|GO:0055085
Trre10g03043 655 SUPERFAMILY SpoIIaa-like 526 648 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03043 Trre-Chr10 39461514 39466262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03043 2 654 Inorganic Solute Cotransporters AT1G22150 77.795 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03043 K17470 - gmx:100797668 1175.23