Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03042 ATGGTGGGAGATTTGGGTGAATGGAAGGAGGGGCAATGTACTTTTGGGTTTGAAGTGGCCGAGGGAATTATTTCAGTAGGTGTATCATCGTATGACTTAATCAATCTGTTGCTGGCTAATGTAGTTTTTGGAGGTTGGGGGACGGTACACCACAATGCATACCATGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTCCACCTTGGTATCATGATACGGGTAGAGAGAAGGATTGTCTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGGTCAATGGGGGAACAGTCAACAACTGGTTCTGTGTTAATTTTTCAAGGAATGTGCAAGACAGTGTTGCACGGGGCTTTTGCTCTGAACTTGCCCATATGTGTTATATATCTGGCATGGCATTTAATCCTGATCCAGTAGTTCCTCCCCTTAGTGCTCGTCCTGATCAAGTAGAAAAGGTTCTGAAAACATGTTATCATGACGCGAAAAACAAGCTACAGGGGAAGGAGCTTGACCTGCTCATTGTCATTTTACCAGATAATAATGGCTCTCTCTATGGTGATCTGAAACGTATATGTGAGACTGACCTCGGGGTTGTTTCCCAGTGTTGTTTAACAAAACATGTATTTAAGATGAGCAAGCAGTACCTTGCAAATGTGGCATTGAAAATCAATGTTAAGGTAGGAGGTAGGAACACTGTGCTTGTCGATGCTCTTTCACGACGCATTCCACTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTAACTCATCCACACCCTGGAGAGGATTCTAGTCCCTCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCTGAAATTACTAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATCGGCAAGAGCTCATTCAGGATCTCTTTAAACAATGGCAAGATCCTGCCAGAGGAACATTGAATGGTGGAATGATCAAGGAGTTTATATCATTCCGCAGAGCTACTGGACAAAAGCCCCAGCGCATCATATTTTACAGAGATGGAGTGAGCGAGGGGCAATTTTACCAAATCATGTTGTTTGAGCTTGATGCAATCCGGATCCGGAGGGTAACTGTTTTGCTTTGTTATTTCTATAATTTCAATTAA 1170 0.4308 MVGDLGEWKEGQCTFGFEVAEGIISVGVSSYDLINLLLANVVFGGWGTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCVNFSRNVQDSVARGFCSELAHMCYISGMAFNPDPVVPPLSARPDQVEKVLKTCYHDAKNKLQGKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPARGTLNGGMIKEFISFRRATGQKPQRIIFYRDGVSEGQFYQIMLFELDAIRIRRVTVLLCYFYNFN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03042 389 Pfam Piwi domain 187 374 IPR003165 GO:0003676
Trre10g03042 389 SUPERFAMILY Ribonuclease H-like 173 374 IPR012337 -
Trre10g03042 389 FunFam Argonaute 10 78 249 - -
Trre10g03042 389 SMART Piwi_a_2 186 389 IPR003165 GO:0003676
Trre10g03042 389 ProSiteProfiles Piwi domain profile. 186 374 IPR003165 GO:0003676
Trre10g03042 389 Gene3D - 78 249 - -
Trre10g03042 389 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 48 374 - -
Trre10g03042 389 Pfam Mid domain of argonaute 95 172 IPR032473 -
Trre10g03042 389 Pfam Argonaute linker 2 domain 49 82 IPR032472 -
Trre10g03042 389 Gene3D - 255 378 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03042 Trre-Chr10 39445753 39448752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03042 48 374 Eukaryotic Initiation Factors Gene Family AT1G48410 83.686 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03042 K11593 - gmx:100780375 636.336