Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03019 ATGGATTTTTTCAACAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAGAGTTCTTCCATTACTACTCCATCTTCATCTTCATCCTCTTTACCTTCAACTTCATCACCATTTTACTCTTCTTACCCCCCTTCCTATTTCCAACCCTCCCTTTCACCTTCTTTTCCTATTGCACAGCCCAATTTCTACACAGAAAATGGTTATTGTTCATCCATGATGACCTACCAATTTCCCTCCTCAGGTAGTAGTAATTCATCAAATAGCCAAAATAATTTCATTGGCTTTGAACAACCACAACCAAATTCTGTTCTTGGGCTAAACAACTTAACCCCATCTCAAATTAACCAGATCCAAGCCCAGATCCAATTTCAAGCCCAACAACAAAACAACAACTTATCCTTTCTTGGGCCTAAGCCCATCTCAATGAAACAGCCTGGTGTACCTCCAAAGCCCACTAAGCTTTATAGAGGTGTTAGGCAAAGACATTGGGGAAAATGGGTGGCTGAGATAAGACTACCTAAAAATAGAACAAGACTTTGGCTTGGTACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATGTTAACAAACAAGGGAAGATTGAGAAAAAAAGTGTGAAAGGTTCTAAGAAGGGTTTGAAAAAAGAACAACCTTTGGATGATGTTGTTGTTGTTGAAGATTCTTTGTCTTCTCCTGAAGGTTCTGATGATTCTTCTCCACTTTCTGATCTTACTTTTGGTGATTATGCTGAGCCACAATGGGAAAATGGTTGTGAACAATTGAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTGGAAAGATGATGGATTGA 897 0.3835 MDFFNNSQDPFNGELMEVLEPFMKSSSITTPSSSSSSLPSTSSPFYSSYPPSYFQPSLSPSFPIAQPNFYTENGYCSSMMTYQFPSSGSSNSSNSQNNFIGFEQPQPNSVLGLNNLTPSQINQIQAQIQFQAQQQNNNLSFLGPKPISMKQPGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDVNKQGKIEKKSVKGSKKGLKKEQPLDDVVVVEDSLSSPEGSDDSSPLSDLTFGDYAEPQWENGCEQLNLQKFPSYEIDWDSLGKMMD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03019 298 CDD AP2 160 210 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 SMART rav1_2 161 227 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 ProSiteProfiles AP2/ERF domain profile. 161 219 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 MobiDBLite consensus disorder prediction 243 265 - -
Trre10g03019 298 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 Gene3D AP2/ERF domain 161 215 IPR036955 GO:0003700|GO:0006355
Trre10g03019 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 212 - -
Trre10g03019 298 SUPERFAMILY DNA-binding domain 161 212 IPR016177 GO:0003677
Trre10g03019 298 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Trre10g03019 298 FunFam Ethylene-responsive transcription factor 2 160 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03019 Trre-Chr10 39224074 39225147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03019 12 293 AP2-EREBP Transcription Factor Family AT1G78080 41.143 8.23e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g03019 AP2 6.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03019 K09286 - gmx:100800478 222.631