Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03017 ATGACAAACCAAAATGTGTTGGGAAAGTCAAGTTTGAATGAGAAGATTTTGGAGTTAGCAATATCAATTTCAAATTCTAATGTATTACCAAGAACATCAGTACCAGATTTAATGGCTTGGTTTGATAGGCTTTTATCTCAGCCGTCCAAAAACAATCTCATTAAACCTTTGGAAGATAATAACGGCAAAGTTAACTCATGGATTGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAAACACGGTTCTGAGAATCGGGACCAAACTCATTGGACCCTTTTTCATCCTTCTGCGTTGAACATGTTTAATCAAATAATGTACAATTCAAATGGGAAACAAATTGTTGTTTTTCTTGATTATGATGGAACTCTATCTCCAATTGTTACAGATCCAGATAGAGCTTTCATGACTAAAAAGATGAGAGCAACTTTAAAGGACATAGCAAGGCATTTCCCCACAGCCATCGTTAGTGGAAGGTGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCAGAATTATACTATGCTGGAAGTCATGGGATGGATATTAAGGGACCAACAAATAGGAGAAGCACTAAAAAAGGTAGTAATGATGGGGTACTTTTGCAGCCTGCTAATGAATTCTTGCCCATGATAAATGAGGTTTATAAGATTTTGGTGGAAAAAACAAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAGTTTTGTTTATCAGTGCATTTTCGCTGCGTTGACGAAAAGAGTTGGGCAGCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGAGTACCCAAAGCTGAAGCTAACACAAGGGAGAAAAGTGTTAGAGATTAGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGTTAGAGTCACTTGGTTTTGCAAATTCTAACAATGTATTTCCAATTTATATTGGTGATGATCGAACTGATGAAGATGCTTTCAAGGTTTTAAGCAATAGAGGCCAAGGGGTTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACCAAAGCTTCATACACTTTGCAAGATCCATCTGAGGTTGGAGAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGCTCTCATTTTCACTAG 1116 0.3772 MTNQNVLGKSSLNEKILELAISISNSNVLPRTSVPDLMAWFDRLLSQPSKNNLIKPLEDNNGKVNSWIDSMRASSPTRTKHGSENRDQTHWTLFHPSALNMFNQIMYNSNGKQIVVFLDYDGTLSPIVTDPDRAFMTKKMRATLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGSNDGVLLQPANEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRCVDEKSWAALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSNNVFPIYIGDDRTDEDAFKVLSNRGQGVGILVSKIPKETKASYTLQDPSEVGEFLRHLVDWKRTSSHFH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03017 371 CDD HAD_TPP 115 355 - -
Trre10g03017 371 Gene3D - 116 347 IPR023214 -
Trre10g03017 371 NCBIfam HAD-IIB family hydrolase 116 324 IPR006379 -
Trre10g03017 371 Pfam Trehalose-phosphatase 117 351 IPR003337 GO:0003824|GO:0005992
Trre10g03017 371 NCBIfam trehalose-phosphatase 112 361 IPR003337 GO:0003824|GO:0005992
Trre10g03017 371 SUPERFAMILY HAD-like 115 364 IPR036412 -
Trre10g03017 371 FunFam Trehalose 6-phosphate phosphatase 211 370 - -
Trre10g03017 371 FunFam Trehalose 6-phosphate phosphatase 205 281 - -
Trre10g03017 371 Gene3D - 196 281 - -
Trre10g03017 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 47 369 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03017 Trre-Chr10 39168853 39171245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03017 116 362 Trehalose Biosynthesis Gene Families AT1G70290 27.376 3.52e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03017 K01087 - gmx:100792915 561.607