Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g03002 | ATGATGATGAAGTACTTCACTCAATTATACACTCATCTAAAATGGGTATTGGATATCATTATATATTATCCCTTCTATAAACTCCATGATTCTCATTTTCCAATAATTGAAGATGTGTACAATGTATGCAGTTATGAATCACCCTCAGAATCAGAGGAAGATGTTGAATGTTCAGTGTGTCTATGCAGAATAGAAGAAAGAGATGAGATTAGAGTATTGAGATGTAACCATATGTATCACAGAGAATGTATGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGAATCATTGGGACCTAAAAGGGCTATAACTGAGCTTGGAGCTGAAGTTCTTTCATTTAATTTGTGTGCAATACGTAGCTATCGAGCTCGTGATGATTGGTTTCTAATTTGA | 408 | 0.3505 | MMMKYFTQLYTHLKWVLDIIIYYPFYKLHDSHFPIIEDVYNVCSYESPSESEEDVECSVCLCRIEERDEIRVLRCNHMYHRECMDKWIAFKNNTCPLCRESLGPKRAITELGAEVLSFNLCAIRSYRARDDWFLI | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g03002 | 135 | SUPERFAMILY | RING/U-box | 48 | 108 | - | - | |
| Trre10g03002 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - | |
| Trre10g03002 | 135 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 45 | 111 | - | - | |
| Trre10g03002 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 106 | IPR013083 | - | |
| Trre10g03002 | 135 | SMART | ring_2 | 57 | 98 | IPR001841 | - | |
| Trre10g03002 | 135 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g03002 | Trre-Chr10 | 38991226 | 38991633 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g03002 | 50 | 102 | C3H Transcription Factor Family | AT2G04240 | 47.170 | 2.02e-13 | 61.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g03002 | K16282 | - | sind:105156745 | 115.931 |