Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03001 ATGATGATGAAGTACTTCACTCTATTATACACTCATCTAAAATGGGTATCGGATATCATTATATATTATCCCTTCTATAAACTCCATGATTCCCATTTTCCAATAATTGAAGATGTATACAATGTATGCAGTTATGAACCAACCTCAGAATCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAGATGAGATTAGAGTATTGAGATGTAACCATATGTATCACAGAGAATGTATGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGAATCATTGGGACCTAAAAGGGCTATAACTGAGCTTGGAGCTGAAGTTCTTTCATTTAATTTTTGTGCTATCCGTAGTGATCGAGCTCGTGATAATTGGTTTTTAATTTGA 408 0.348 MMMKYFTLLYTHLKWVSDIIIYYPFYKLHDSHFPIIEDVYNVCSYEPTSESEEDVECSVCLCKIEEGDEIRVLRCNHMYHRECMDKWIAFKNNTCPLCRESLGPKRAITELGAEVLSFNFCAIRSDRARDNWFLI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03001 135 SMART ring_2 57 98 IPR001841 -
Trre10g03001 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 42 111 - -
Trre10g03001 135 Pfam Ring finger domain 56 99 IPR001841 -
Trre10g03001 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 106 IPR013083 -
Trre10g03001 135 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Trre10g03001 135 SUPERFAMILY RING/U-box 50 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03001 Trre-Chr10 38961647 38962054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03001 50 102 C3H Transcription Factor Family AT2G04240 49.057 1.08e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03001 K16282 - sind:105156745 129.413