Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02997 ATGACTGATTCACACTCAATTAATGTTGAATCATCACCTAAGCTTGAATTATATGCTAAACAAACAAAAAATATAACCTCTGAAGCTGAACACTCTCCATCTAGCATCCAAAAGGCTATTGCTGAATTGGTAGGAACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTGTCAATGAGAGGTTACAAATCACGGTAGTTGGCATAGCAATTGTTTCAGGATTAGCTCTAACTGTCGCTATATATTCGGTTGGTCACGTCTCTGGTGGTCATTTCAATCCTGCTGTCACAATTGCCTTAGCCGTTGTTCGAAAAATTCAATTGAAACTTGTGCCTGTTTATTTGGTGTGTCAATTGATGGGTGCTACAATGGCCACACTCACTCTCAAAGTGTTGTATCATGAAAAGGTGTCAATTGGAGTAACATTGACTCAATACTCAAATTCAACTTCTAATCTTGAAGCATTAGTGTGGGAATCCATAATCACTTTCATACTTATGCTAACTATTTGTGGTGTTGCCACTGATCAGAGAGGGAGCAAAGAACTTGCTGGAGTTGCAATAGGCCTTTCAGTTCTGATTAATATAATCATTGCCGGGCCGATAACAGGAGCATCGATGAATCCAGGAAGGAGTTTGGGCCCTGCCATAGTATCAGGAAATTACAAAAACATTTGGGTTTATATCATAGGCCCAATTATTGGAGCAGTTTTTGCAAGTGTGCTTTATACTTTCTTAAGAGTAACAAAACCAGCTCAACCAGAACAATCTCATGTGTGA 783 0.3908 MTDSHSINVESSPKLELYAKQTKNITSEAEHSPSSIQKAIAELVGTYILIFAGCGAALVNERLQITVVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAVVRKIQLKLVPVYLVCQLMGATMATLTLKVLYHEKVSIGVTLTQYSNSTSNLEALVWESIITFILMLTICGVATDQRGSKELAGVAIGLSVLINIIIAGPITGASMNPGRSLGPAIVSGNYKNIWVYIIGPIIGAVFASVLYTFLRVTKPAQPEQSHV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02997 260 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Trre10g02997 260 Gene3D Glycerol uptake facilitator protein. 3 259 IPR023271 -
Trre10g02997 260 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 NCBIfam MIP family channel protein 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PANTHER AQUAPORIN NIP2-1 20 251 IPR034294 -
Trre10g02997 260 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g02997 260 SUPERFAMILY Aquaporin-like 32 253 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02997 Trre-Chr10 38893441 38895221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02997 32 254 Major Intrinsic Protein MIP AT5G37820 49.784 2.02e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02997 K09874 - gmx:100798380 383.645