Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02996 ATGGATAAATTTTGCTGTTTGAAGTCTTCATTCTCTAAGCTTGTGTCTACGCGATCATCATCTAGTACCGGTAAAGGAAAAAATCATGAAGGGTCAATTAAGTATGGTTTCACCCTAGTGAAAGGGAAAGCGAATCATCCAATGGAGGATTACCATGTTGCCAAGTTTGTGCAGACACAGGGAAAAGAATTGGGTTTGTTTGCTATTTACGATGGCCACTTGGGGGATCGCGTGCCTTCGTATCTACAGAAACATTTATTTTCCAACATTTTAAAGGAGGATGAATTTTGGAATGACCCTGGTGCATCTATATCAAAAGCATATCTGAGCACAGATCAGACAATTCTTTCGCATAGTTTTGATTTAGGGCGCGGCGGATCAACAGCTGTAACTGCAATATTAATCAACGGTCAAATTTTGTGGACAGCTAATGTTGGAGATTCACGAGCAGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACAGATCATGAGCCCAATACAGAGCGAGGCATCATTGAGAACAAAGGTGGTTTTGTCTCCAACTTGCCAGGTGATGTCCCTAGAGTAAATGGACAACTGGCCGTTGCTCGTGCATTTGGAGACAAGAGTCTGAAATCTCATTTGCGATCAGACCCTGATGTACAAAATACTGATGTAGATGTTGATATTGATCTTCTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGGCTAATCAAGAGGCAGTTGATATTGCTAGAAAGGTGAGAGATCCACTGAAAGCAGCTAAACAATTAACAGCTGAAGCATTAAAAAGAGAGAGTAAAGATGATATATCTTGTGTTGTGGTTAGATTTAGGTGTTGA 852 0.4049 MDKFCCLKSSFSKLVSTRSSSSTGKGKNHEGSIKYGFTLVKGKANHPMEDYHVAKFVQTQGKELGLFAIYDGHLGDRVPSYLQKHLFSNILKEDEFWNDPGASISKAYLSTDQTILSHSFDLGRGGSTAVTAILINGQILWTANVGDSRAVLSRKGQAVQLTTDHEPNTERGIIENKGGFVSNLPGDVPRVNGQLAVARAFGDKSLKSHLRSDPDVQNTDVDVDIDLLILASDGLWKVMANQEAVDIARKVRDPLKAAKQLTAEALKRESKDDISCVVVRFRC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02996 283 FunFam Probable protein phosphatase 2C 39 25 282 - -
Trre10g02996 283 Gene3D - 29 283 IPR036457 -
Trre10g02996 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Trre10g02996 283 SMART PP2C_4 30 279 IPR001932 -
Trre10g02996 283 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
Trre10g02996 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Trre10g02996 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Trre10g02996 283 CDD PP2Cc 33 281 IPR001932 -
Trre10g02996 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02996 Trre-Chr10 38861393 38864993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02996 1 282 PP2C-type Phosphatase Gene Family AT1G22280 71.181 2.05e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02996 K17506 - gmx:100797292 466.463