Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02990 ATGATCAACATGAAAAACATTAATCTTTTTAGACTATTTAGTTTCAGTCATGGACAAGCATGGCTCACTTTGTTACTTGTTATTACTCTCATACAAAATTTACTGCTGGTGACCGGTCAAAGTCAAACACTTGGACTGGAAGATCCAACGGGGAACAACAACTCATTACCCACCATAGTGGTAATTATAGCCTTTACATTCCTCTTCTCCATTTTCCTTTCTCTATGCCAAGCTAGATGTAGCGAACGTCAATCGGCGGTTAGTTTCGACGTTAGTTTACCTATCGGCGGAAGCAGTCTCCAGGCACAAAACAACGTGCCGAGTAACGGTCTCAACCAAGATGTTATTGATACATTCCCAACTTTTTGTTACTCCAATGTGAAGGGACTTAAGATTGGAAAAAGCACTTTGGCTTGTGCTATTTGCTTGAATGACTTTCAAGATGATGAAACATTGCATTTAATACCTAAATGTAGTCATGTGTACCACCATGGTTGTATTGATATTTGGCTTGTTTCTCATAATACTTGTCCTGTTTGTCGTGCTAGCCTTGATCCAAGACTTGAAGACACAGTTGTGCCTCCAACTATAACCATTCAGATACCAGAAGGGGAATTACATCATAATGAGGAAGAAGTAGATCTTGATATTCATGAGGATCAAAAGAGAGACAACATTGAAGTGGAATATTCAACAAAGGTAAATTCACTTCGAAGGTCTCACACATATTGTGCATCAACAAGATCAAGATCATCGGGATTCTTATCTACTATCTTGTTATCACGGTCGAATTCAACAGGTGTGTTGTTGAAACCAGGTGAGGATTGTGAGAGGTTTACATTGAGGTTACCTGATGAAGTACAGAATCAAATGATGATGAATACAAAGATGCATAAGCGTGCAAAAAGTTGTGTGAGTTTTAAGAAAATGAGCAGTGGCATTTGCGGTTATAGGTCAAAAAGTGTTGGATGTGGAAGTGGGTGGTGTCATGGGGATTACGAAAGGTTTGTAAGTGAGGAGGAAGAGAACTTAGGGTTTGTTAGAAACACTTGGCATAATAATTGTTTTAGAAAATCTCCGGTGAAGTGTTTGGAAGTTAATATGGACAATATTGGAGGTGAGCGGTCGTCTAATCTTTCGATTCCTATGTAG 1152 0.3898 MINMKNINLFRLFSFSHGQAWLTLLLVITLIQNLLLVTGQSQTLGLEDPTGNNNSLPTIVVIIAFTFLFSIFLSLCQARCSERQSAVSFDVSLPIGGSSLQAQNNVPSNGLNQDVIDTFPTFCYSNVKGLKIGKSTLACAICLNDFQDDETLHLIPKCSHVYHHGCIDIWLVSHNTCPVCRASLDPRLEDTVVPPTITIQIPEGELHHNEEEVDLDIHEDQKRDNIEVEYSTKVNSLRRSHTYCASTRSRSSGFLSTILLSRSNSTGVLLKPGEDCERFTLRLPDEVQNQMMMNTKMHKRAKSCVSFKKMSSGICGYRSKSVGCGSGWCHGDYERFVSEEEENLGFVRNTWHNNCFRKSPVKCLEVNMDNIGGERSSNLSIPM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02990 383 Pfam Ring finger domain 138 181 IPR001841 -
Trre10g02990 383 SUPERFAMILY RING/U-box 133 188 - -
Trre10g02990 383 SMART ring_2 139 180 IPR001841 -
Trre10g02990 383 FunFam E3 ubiquitin-protein ligase ATL6 99 187 - -
Trre10g02990 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 187 IPR013083 -
Trre10g02990 383 PANTHER RING FINGER DOMAIN-CONTAINING 58 189 - -
Trre10g02990 383 CDD RING-H2_EL5-like 139 181 - -
Trre10g02990 383 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02990 Trre-Chr10 38818995 38820146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02990 25 299 Rapid Response to Elicitors AT3G05200 36.268 4.83e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02990 K10664 - gmx:100814384 283.493