Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02987 ATGGCTTATCCACATTATCGATCACAGTTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGATTAGCTTGGGAAACACCAACTGATGAAATGAGAACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACCGATAAGAATACCGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATCCAGAATCAGCAAGAAGAGCTTGTGCTGATCCAAACCCAGTAATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGGAGGGGTACATATCAAGGTGGAGGGGTGGGGAGTGGAGCACCGGGAGGAGCGGCGTACGGTGGTGTTCCGGCAGCAGGAGGGCCACCACAATTGGCAGGAGGAGCAGGAACTCCAGTAATGTACCAACCATATGGCTACCCCACGTACACTCCTGAATATGGGTACCATCAAGCTACAATGTATAACCCTCAGATGCAGCAAGCACAATACTATCAACAACTCTATGGACCATCATCTTCAACAATGGCTTCACCATATTACTATGGTTATTCTGTGCAAGCAGCTGCACCAAGGGGTGGTACATTTTCTACACCTCAACCACATCGCATGGCAGCTGGACCATCCTATCTATACTACCCTCCTACACCGATCGAAGGAGGTTCCTTCTCTGCTATACCATATCGTCCAATTCAACAACAACCTTTAATAAGGCACCCTTCTCCTTCCCCTTCTCCTAATGGTAATTTTTCTCTTCTCGTCTCTTCTCAACTGATGTCTGATATCTGA 816 0.451 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGVGSGAPGGAAYGGVPAAGGPPQLAGGAGTPVMYQPYGYPTYTPEYGYHQATMYNPQMQQAQYYQQLYGPSSSTMASPYYYGYSVQAAAPRGGTFSTPQPHRMAAGPSYLYYPPTPIEGGSFSAIPYRPIQQQPLIRHPSPSPSPNGNFSLLVSSQLMSDI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02987 271 PANTHER BOULE-RELATED 6 239 - -
Trre10g02987 271 MobiDBLite consensus disorder prediction 91 112 - -
Trre10g02987 271 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Trre10g02987 271 SMART rrm1_1 17 89 IPR000504 GO:0003723
Trre10g02987 271 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Trre10g02987 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Trre10g02987 271 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre10g02987 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Trre10g02987 271 Gene3D - 3 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02987 Trre-Chr10 38741920 38746549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02987 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.97e-15 73.2