Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02986 ATGGCTTATCCACATTATCGATCACAGTTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGATTAGCTTGGGAAACACCAACTGATGAAATGAGAACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACCGATAAGAATACCGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATCCAGAATCAGCAAGAAGAGCTTGTGCTGATCCAAACCCAGTAATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGGAGGGGTACATATCAAGGTGGAGGGGTGGGGAGTGGAGCACCGGGAGGAGCGGCGTACGGTGGTGTTCCGGCAGCAGGAGGGCCACCACAATTGGCAGGAGGAGCAGGAACTCCAGTAATGTACCAACCATATGGCTACCCCACGTACACTCCTGAATATGGGTACCATCAAGCTACAATGTATAACCCTCAGATGCAGCAAGCACAATACTATCAACAACTCTATGGACCATCATCTTCAACAATGGCTTCACCATATTACTATGGTTATTCTGTGCAAGCAGCTGCACCAAGGGGTGGTACATTTTCTACACCTCAACCACATCGCATGGCAGCTGGACCATCCTATCTATACTACCCTCCTACACCGATCGAAGGAGGTTCCTTCTCTGCTATACCATATCGTCCAATTCAACAACAACCTTTAATAAGGCACCCTTCTCCTTCCCCTTCTCCTAATGATTCACAGAGTCAGCAACGTACCTCATCAGAGACAGCATCTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGGAAGAACAACAACTAA 864 0.4491 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGVGSGAPGGAAYGGVPAAGGPPQLAGGAGTPVMYQPYGYPTYTPEYGYHQATMYNPQMQQAQYYQQLYGPSSSTMASPYYYGYSVQAAAPRGGTFSTPQPHRMAAGPSYLYYPPTPIEGGSFSAIPYRPIQQQPLIRHPSPSPSPNDSQSQQRTSSETASGVVITSESSNTQGKNNN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02986 287 MobiDBLite consensus disorder prediction 240 287 - -
Trre10g02986 287 MobiDBLite consensus disorder prediction 91 112 - -
Trre10g02986 287 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Trre10g02986 287 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Trre10g02986 287 SMART rrm1_1 17 89 IPR000504 GO:0003723
Trre10g02986 287 MobiDBLite consensus disorder prediction 252 287 - -
Trre10g02986 287 PANTHER BOULE-RELATED 6 265 - -
Trre10g02986 287 Gene3D - 3 113 IPR012677 -
Trre10g02986 287 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre10g02986 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Trre10g02986 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02986 Trre-Chr10 38739763 38746549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02986 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.04e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02986 K25006 - gmx:100787086 367.851