Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02984 ATGAATCAAAACGATCTTCAGCCTTTACCATTGCTAAGTAGCTTCCTAGGTTCAACATCACAAGAACCTTTGCAAGAAAATGAAAATTACAAATCATGCTATAATCAAGCTGAGGATGTCACAGTGGCCTTACACATAGGCCTACCTGACAATAATTCAATTGAATCACCAGTTGATAATGGTTTTGTGAATGTCTCAAATCATGTCCCTAACAATTACTGGATACCAACTCAAGAACAGATTCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCCACAAAACTTTCAATCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAGAGGACCAGACTCACTGAAAAGAACTCATCCGCGACCGCTGTTAGACCTTCCATGCTATTGTTGTTCAAAGGGGTGTAAGAACAACATTGAACATCCAAGAGCTAAACCATTGAAGGATTTTAGAACATTGCAAACACATTACAAGAGAAAGCACGGATCGAAGACATTTACTTGTCGAAAATGTGGGAAGCCATTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAGCGTTGGCTTTGTATCTGTGGTTCTGATTTCAAACACAAGAGATCACTTAAAGATCATATCAAAGCATTTGGATTTGGTCATAGCCCTTTTTCTTCTTCCTCTGATGGCATTTGA 702 0.396 MNQNDLQPLPLLSSFLGSTSQEPLQENENYKSCYNQAEDVTVALHIGLPDNNSIESPVDNGFVNVSNHVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKTFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSDGI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02984 233 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Trre10g02984 233 Gene3D Classic Zinc Finger 87 110 - -
Trre10g02984 233 FunFam Zinc finger protein WIP2 141 223 - -
Trre10g02984 233 Pfam Zinc finger, C2H2 type 88 107 IPR013087 -
Trre10g02984 233 PANTHER ZINC FINGER PROTEIN WIP2 21 227 IPR043584 GO:0003700|GO:0010468
Trre10g02984 233 SUPERFAMILY beta-beta-alpha zinc fingers 83 110 IPR036236 -
Trre10g02984 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Trre10g02984 233 SMART c2h2final6 135 167 IPR013087 -
Trre10g02984 233 SMART c2h2final6 172 192 IPR013087 -
Trre10g02984 233 SMART c2h2final6 88 110 IPR013087 -
Trre10g02984 233 FunFam zinc finger protein WIP2-like 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02984 Trre-Chr10 38720733 38721765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02984 1 229 C2H2 Transcription Factor Family AT1G34790 58.167 3.34e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02984 zf-C2H2 0.00054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02984 - - cam:101491653 434.876