Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02957 ATGACCTTAGAGGCTGTGGTTTTTCCTCAAGATATACTGAGTTACGGTTGCAAAGATTACTTGTACTCTTTAGTTGAAATTGACACAACTAGAAGTGAAGGATCTTGTAGCCACAACAATGGATGCCAAACAAAAGAAGAAGACCTTTTTGGAATCATCAACAATAACTTAAACCAAAATATCTATGCAAATTGGGATTCTTCTTCTCCTTCAGTGATGCAAAATGGTAAAGACCAATGGGATTCAAACTCTTCCCCTGAAACTTCCAATCTTCCATCACTAACTGTGGAAGCCATGACTACAAGTCGTCGACGCAAACGACGCCGTGCTGCGAGCCCAAAGAACGACGAAGAAATTGAGTTCCAGAGGATGACTCACATTGCTGTCGAGCGTAATAGAAGGAAACAAATGAACGAGTATCTAGCTGTCCTTAGATCCATGATGCCGCGGTCTTATGCAAAAAGGGGAGATCAAGCATCCATAGTTGGAGGTGCAATAAACTTCATGAAGGAGCTAGAACATCATCTACAATCCATGATAGGGCAAAAGAAAATAAACCAAAAACAGCATGAAAATGGTTCATCATCATCATCATCACCCTTTGCTGAGTTCTTCATGTTCCCACAGTACTCAACGTGTGAATCTCAGAGCAACACGTGCTACCCTGCCAACCAGATGAATCAGTCACGTGCCATGGCAGATATAGAAGTAACTTTGGTTGATAGCCATGCTAATATCAAGATAATGTTGAAGAAACGACAAGGACAAGTTATGAAGATGGTTGTTGGGCTTCAAAACCTAGGCTTCAACATTCTACACCTTAATGTTTCTACTGTGGATGATTTTGTCCTTGTCTCGGTTACTGTCAAGGTAGAGGAAGGGTGTCAATTGAACACGGTGGATGAAATTGCAACTGCTGTGAATCAACTATCATGCAGAATCTACGTGGAAGCTGTACTTTGA 963 0.4133 MTLEAVVFPQDILSYGCKDYLYSLVEIDTTRSEGSCSHNNGCQTKEEDLFGIINNNLNQNIYANWDSSSPSVMQNGKDQWDSNSSPETSNLPSLTVEAMTTSRRRKRRRAASPKNDEEIEFQRMTHIAVERNRRKQMNEYLAVLRSMMPRSYAKRGDQASIVGGAINFMKELEHHLQSMIGQKKINQKQHENGSSSSSSPFAEFFMFPQYSTCESQSNTCYPANQMNQSRAMADIEVTLVDSHANIKIMLKKRQGQVMKMVVGLQNLGFNILHLNVSTVDDFVLVSVTVKVEEGCQLNTVDEIATAVNQLSCRIYVEAVL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02957 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 172 IPR011598 GO:0046983
Trre10g02957 320 Gene3D - 113 199 IPR036638 GO:0046983
Trre10g02957 320 PANTHER MAX DIMERIZATION, MAD 89 316 - -
Trre10g02957 320 MobiDBLite consensus disorder prediction 68 99 - -
Trre10g02957 320 SMART finulus 127 178 IPR011598 GO:0046983
Trre10g02957 320 Pfam Helix-loop-helix DNA-binding domain 122 173 IPR011598 GO:0046983
Trre10g02957 320 MobiDBLite consensus disorder prediction 68 119 - -
Trre10g02957 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02957 Trre-Chr10 38387369 38395662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02957 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 43.974 2.21e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g02957 HLH 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02957 - - gmx:100797856 350.132