Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02956 ATGGGTGCCATATGTGGTTGTTTAAGGGGGTCACCTCAGAGTCCACAAAATAATGGTAGTCATCATCATCATCATTATCATCATCATCAAGAAACTCGAGATATCAACACTTCTTTTGTTTACTCTTATAGACATAGTGAAACTGAAACTACACAATTTCCATTTTCAAAGAATCCAGCTACAAATTCAGAATTAGTTACATCAATCAAAGCTAAATCCGTCGAGTCCAGTTTTAAATATTTCGCATGTGAATCAGAATCATGGCATGAAAATTCTTGTGTTATATGTTTTGAAGAATATACGGATCACAATCCTAAGATTACTACGGAGTGTTGCCGTCAACATTATCACCTAACTTGTATATATGAATGGAAAAATAGGAGTGAAACTTGTCCAACTTGCAGACAGGAGATGATTTTTAATGAAATGGCATGA 435 0.3471 MGAICGCLRGSPQSPQNNGSHHHHHYHHHQETRDINTSFVYSYRHSETETTQFPFSKNPATNSELVTSIKAKSVESSFKYFACESESWHENSCVICFEEYTDHNPKITTECCRQHYHLTCIYEWKNRSETCPTCRQEMIFNEMA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02956 144 SUPERFAMILY RING/U-box 80 140 - -
Trre10g02956 144 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 142 - -
Trre10g02956 144 Pfam Ring finger domain 91 135 IPR001841 -
Trre10g02956 144 SMART ring_2 93 134 IPR001841 -
Trre10g02956 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 141 IPR013083 -
Trre10g02956 144 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02956 Trre-Chr10 38375572 38380073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02956 67 142 C3H Transcription Factor Family AT5G38895 46.053 1.81e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02956 - - psom:113281853 85.8853