Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02955 ATGGCCAAAACACTTGATCGGTATCAAAGATGCAGTTATGGAGCCTTGGAACTGCAGCATCAACCTGAAATTGAAACACAGAAGCGCTATCAAGAATATCTCAAGCTAAAATCAAAAGTTGAGGCACTACAGCAAACACAAAGAAACATTCTTGGAGAAGAATTGGAGCACTTAGATATCAACGATCTGGAGCAGCTAGAACGCCAGTTAGACTCTTCTTTAAAGACAATCAGGTCAAACAAGACACAGCATATGCTTGATCAACTCTCAGATTTGCAAAGAAAGGAAGAGATGCTACTGGAAACTAATAATATCCTGAGGAACAAGTTGGAGGAAATTAATGTGACACTTCAACCATCATGGGAATCTAGGGAGCAAAATGTACCCTATGGCTGCCACCCTCACCAATCAGAAGGATACTATGAGAAAGCACGTTGCAATAGTACATTGCAAATTGGCTACAATACTTCAGTGTTAAATAATGAATCGGGAGAAGCAGCAGGAACATCATCTCAGAATGCCAATGACTTTATGCATGGATGGATGAATTGA 552 0.4022 MAKTLDRYQRCSYGALELQHQPEIETQKRYQEYLKLKSKVEALQQTQRNILGEELEHLDINDLEQLERQLDSSLKTIRSNKTQHMLDQLSDLQRKEEMLLETNNILRNKLEEINVTLQPSWESREQNVPYGCHPHQSEGYYEKARCNSTLQIGYNTSVLNNESGEAAGTSSQNANDFMHGWMN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02955 183 Coils Coil 89 112 - -
Trre10g02955 183 MobiDBLite consensus disorder prediction 163 183 - -
Trre10g02955 183 Pfam K-box region 25 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre10g02955 183 Coils Coil 63 83 - -
Trre10g02955 183 ProSiteProfiles K-box domain profile. 26 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02955 Trre-Chr10 38327240 38335567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02955 1 182 MADS-box Gene Family AT5G15800 47.739 2.53e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02955 K09264 - gmx:100811049 308.531