Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02947 ATGGAATCTTGGAGTTACATCCCAGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCGCTTGATGCTTTTATGAGAAGTAGAAAACCGTTGGTTGAATGGGAGAACAAATCTTCTTGTAACTTTGAAAGAGATGGATTTAAAGGTATGGAGTTTGTGGATTTGGGATTTCCCGATTTTCTACAAAAGTCTTTTCATAGTAGCAAGCCTATGGAGACATCTAGGATTGTTCATGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCTTCACATCTTATAGCTTTTGATTCATCTTTTGGCGAAGAAGATTCCGAGCAAAAGCATTTAAGTTCTTCTCTAGTTGCATCAAAAAATCATGATTCTTCGTTGATTGGTCTGAAGCTAGGGAGATTAGCAGATTTTCAAGGTGCAAACATTGAGAGAGATGCAAAAGAATTCACTTCTACAGCTATGCATCAAACCTCGCTAGCTAAGAGAGCTCGCACCTCTAGCTTACCTGCTAAGGCTCCTGTATGTCAAGTATATGGTTGTAATATGGACCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAGAGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTGAATGGCATTGAACAGAGATTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAATTCGATGATGGTAAACGTAGTTGTCGCAGACGTCTAGCTGGACACAATGAACGACGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGACATATCAAACTTGAAGAGGAGCCAATTTGCAGCCCTCGACTAGAACCACCCACCACACTTGGTCACGAGTTATCTACCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCGTTGCACCACACAGCAGGAAATACATTACCAACTTCTCGTGCTTTTCGGGACATCCGCACACAAGATAGAGACGACCAAGTTTCTGAAACGCCTTTGCCTTTGAAGATAAGCTCTGTGGATAAACATGGACAAAATGAGTCTTTTCCATGTGGGATAAACTCTAAGGAAGTTATCAAATCTGAAAATGGAGGAGCCACTGTTGATTTGTTTCAACTATCTTCTCATCTTCAAAGGGTGGAACAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAGATGAGGATTGCTCTTTCCCAACAGTGTAA 1290 0.4039 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFKGMEFVDLGFPDFLQKSFHSSKPMETSRIVHGSVQTSSCELDSNNSSKRGNSSSHLIAFDSSFGEEDSEQKHLSSSLVASKNHDSSLIGLKLGRLADFQGANIERDAKEFTSTAMHQTSLAKRARTSSLPAKAPVCQVYGCNMDLSSSKDYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGHIKLEEEPICSPRLEPPTTLGHELSTRALSLLSAQSQNPLHHTAGNTLPTSRAFRDIRTQDRDDQVSETPLPLKISSVDKHGQNESFPCGINSKEVIKSENGGATVDLFQLSSHLQRVEQQRNSVLVKWEDEDCSFPTV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02947 429 SUPERFAMILY SBT domain 183 264 IPR036893 GO:0003677|GO:0005634
Trre10g02947 429 Pfam SBP domain 185 258 IPR004333 GO:0003677
Trre10g02947 429 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
Trre10g02947 429 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 337 IPR044817 GO:0003677
Trre10g02947 429 MobiDBLite consensus disorder prediction 74 101 - -
Trre10g02947 429 Gene3D - 176 246 IPR036893 GO:0003677|GO:0005634
Trre10g02947 429 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02947 Trre-Chr10 38231429 38234637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02947 170 427 SBP-box Gene Family AT1G69170 42.997 6.38e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre10g02947 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02947 - - psat:127119704 632.869