Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02944 ATGAACCAAGAAGAGAAAGTTACCATGGACTTGATTCCAGCTTCTGATCAACACCTTTGTTATGTTCGTTGCAACTTTTGTAACACTGTCCTTGCTGTTGGAATACCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACAAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCCTAACTCTCCAGGGGATTTACAGTAGCAAAAAGGGTCAACCATCATCATCTTCATCTTCTTCACCAACTACTTCAACTGACTCATTGTCCCCTAAACCACCGCCATTTGTTGTTAAACCTCCTGAGAAGAAGCACCGTCTTCCTTCTGCCTACAACCGTTTTATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATACCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCAATGTCCGCAACTAAAAGGAACCTTGTAAGAATTAATTAA 534 0.4307 MNQEEKVTMDLIPASDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQGIYSSKKGQPSSSSSSSPTTSTDSLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSMSATKRNLVRIN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02944 177 PANTHER PROTEIN YABBY 6-RELATED 15 169 IPR006780 GO:0007275
Trre10g02944 177 Gene3D High mobility group box domain 101 171 IPR036910 -
Trre10g02944 177 MobiDBLite consensus disorder prediction 78 116 - -
Trre10g02944 177 CDD HMG-box_SF 118 154 - -
Trre10g02944 177 MobiDBLite consensus disorder prediction 78 103 - -
Trre10g02944 177 SUPERFAMILY HMG-box 100 156 IPR036910 -
Trre10g02944 177 FunFam protein CRABS CLAW isoform X3 109 169 - -
Trre10g02944 177 Pfam YABBY protein 16 157 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02944 Trre-Chr10 38180880 38183411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02944 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 66.279 2.83e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre10g02944 YABBY 7.3e-55 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02944 K25796 - gmx:100819079 274.248