Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02943 ATGAACCAAGAAGAGAAAGTTACCATGGACTTGATTCCAGCTTCTGATCAACACCTTTGTTATGTTCGTTGCAACTTTTGTAACACTGTCCTTGCTGTTGGAATACCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACAAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCCTAACTCTCCAGCAGGGGATTTACAGTAGCAAAAAGGGTCAACCATCATCATCTTCATCTTCTTCACCAACTACTTCAACTGACTCATTGTCCCCTAAACCACCGCCATTTGTTGTTAAACCTCCTGAGAAGAAGCACCGTCTTCCTTCTGCCTACAACCGTTTTATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATACCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCAATGTCCGCAACTAAAAGGAACCTTGTAAGAATTAATTAA 537 0.432 MNQEEKVTMDLIPASDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQQGIYSSKKGQPSSSSSSSPTTSTDSLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSMSATKRNLVRIN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02943 178 CDD HMG-box_SF 119 155 - -
Trre10g02943 178 MobiDBLite consensus disorder prediction 78 117 - -
Trre10g02943 178 Gene3D High mobility group box domain 102 172 IPR036910 -
Trre10g02943 178 FunFam protein CRABS CLAW isoform X3 110 170 - -
Trre10g02943 178 Pfam YABBY protein 16 158 IPR006780 GO:0007275
Trre10g02943 178 SUPERFAMILY HMG-box 101 157 IPR036910 -
Trre10g02943 178 MobiDBLite consensus disorder prediction 78 104 - -
Trre10g02943 178 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02943 Trre-Chr10 38180880 38183411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02943 1 169 C2C2-YABBY Transcription Factor Family AT1G69180 65.698 1.40e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre10g02943 YABBY 2.9e-55 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02943 K25796 - gmx:100819079 269.626