Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02935 ATGGCACAACGTAAGCGCTTGAACATGGAAATAGACATTGATATTAATTGTGATGTTATTGATGCGAGAGACCACCAACCTATTGATGCTGGTATGTGTTATCCTGCTCAATTTTCACCTAAGTTTGCGAGATCTACATTTTCGCTTTCTTCAAAGGACGATGATAAACAATTGTTCCGGTCAGATGATTCCAGTAAAAAGTGTGATTTGCCCTTGTCAGACATACAAAAGGGATTTCAATGTCCAATTTGCCTAGGCATCATCAAAAAGGCGAAAATAGTAAAGCAGTGCAATCATCGGTTTTGCAAAGAATGCATTGAAAAAGCATTCCGCCTAAGTAACCATAAATGTCCAATATGTCGAGTACACTGTCCAAGTAGACGCGCCCTAATGGATGATGTGGAATTTGATTCCAAGATTGCTAGTTCATTTCCATACTTAGAAAAATCTGATCAAGAGGAAATGACTTTAAATGCGATCAACAAGAAGATTGAGAAGACAAAGCAAAAAACTTGTAAAGCAATTCTGGAGAAGCAACATGATGCAGCTTCAATGAGCACAAAAGATGGTGGGGTCAAAGAAATTATAGAATCAAGTAGAAGAAGTGAGGCTGAACAACCAATTCCTCAAGACAATGTTCTTGCTTCTCCTAATAACTTGATGGATTTTATTAGATCATCTTCTTCACTTGCATGGAAAGGAAGTGGCCAAAGAAGCAACAATCGAGCAATTGCTAATAATACTAACGCAAATAGAAGCAACAACCGCATCTCCAGATTAATCGAGCATCTTCGTAACCTTAGCCGAGAAAATAAAGATGAGCTGGATATATTTGTCAAGTTTATCTCTTTTGAAGAGGAAAGAGTCCCAAATATGAGGATATCATACCTTTTGTTCAAGCCTACCATGTCAATCAGTCAATTGTGTGAGTACGTTGCATTAGAAACATCTTTGCAAACGGAAGAAATTGAGCTGTATGTAATTAAAGAGTGTCAACCCAACATTATACTTGGTGATGCCAGATTGGACCCTAGTGACATTAAGTCAGAACTATTGACTAGAGAGGAACAAACTTTGGCTGAACTTGTGCCAGAAAATCTTAATCGCGGCCATTTGAGTGGCATCAGAGCTCTTGGTTAA 1140 0.3825 MAQRKRLNMEIDIDINCDVIDARDHQPIDAGMCYPAQFSPKFARSTFSLSSKDDDKQLFRSDDSSKKCDLPLSDIQKGFQCPICLGIIKKAKIVKQCNHRFCKECIEKAFRLSNHKCPICRVHCPSRRALMDDVEFDSKIASSFPYLEKSDQEEMTLNAINKKIEKTKQKTCKAILEKQHDAASMSTKDGGVKEIIESSRRSEAEQPIPQDNVLASPNNLMDFIRSSSSLAWKGSGQRSNNRAIANNTNANRSNNRISRLIEHLRNLSRENKDELDIFVKFISFEEERVPNMRISYLLFKPTMSISQLCEYVALETSLQTEEIELYVIKECQPNIILGDARLDPSDIKSELLTREEQTLAELVPENLNRGHLSGIRALG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02935 379 Coils Coil 250 270 - -
Trre10g02935 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 150 IPR013083 -
Trre10g02935 379 SUPERFAMILY RING/U-box 72 128 - -
Trre10g02935 379 ProSitePatterns Zinc finger RING-type signature. 97 106 IPR017907 -
Trre10g02935 379 Pfam Zinc finger, C3HC4 type (RING finger) 80 120 - -
Trre10g02935 379 PANTHER OS11G0578200 PROTEIN 57 190 IPR044592 -
Trre10g02935 379 Coils Coil 150 170 - -
Trre10g02935 379 CDD RING-HC_RING1-like 79 142 - -
Trre10g02935 379 ProSiteProfiles Zinc finger RING-type profile. 81 121 IPR001841 -
Trre10g02935 379 SMART ring_2 81 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02935 Trre-Chr10 37938551 37944878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02935 73 121 C3H Transcription Factor Family AT1G53820 36.538 4.75e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02935 K10695 - gmx:102666848 256.914