Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02928 ATGCTTAACTTATCATCTTCTTCTTCTTCTTCTCCTTCTTCATTCTTTTGTATCATTATTCTCATCCAAACAACACTTTTTTTTAGTTTCTCTTTCTCTTCTTCTAACAATGAAGCCAAAATTCTCTTCACATGGCTTCATAGTTCATCTTCAAAACCACCTTCATCATTCTCTAACTGGAACATCCATGATACTAATCCATGCAAATGGACCTCCATAACATGTTCATCACTCTCTTTTGTAACTGAAATCAATATTCAATCCATTCCTCTTCAACTTCCTATACCTTCCAATCTCTCTTCATTTCCTTATCTTACCAAACTTGTCATTTCTGATTCCAATCTCACTGGTACCATTCCTTTTGACATTGGTGATTGTTCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTTGTTGGTTCTATTCCTTCAAGTATTGGAAAGTTAGAGAATCTAGTGAACTTGTCTTTGAATTCGAACCAACTTACCGGAAAAATTCCGGATGAGATAAGTACTTGCATTAGTCTCAGAAATCTTCACCTTTTTGATAATCAGTTAGATGGAAGTATCCCGAATTCGCTCGGAAAGTTGTCGAAACTTGAAGTACTTAGAGCAGGTGGAAACAAAGATATAATTGGGAAAATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGTCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTTCTTTTGGTAAACTTCAAAAGCTTCAAACTTTGTCAATTTATACAACTATGCTATCAGGTGAAATTCCTAAAGAGTTAGGTAACTGTTCTGAACTTATTGATTTGTTTCTATATGAAAATAGCTTATCAGGATCTATACCATCAGAGATTGGTAAGCTAAAGAAGCTTGAACAGTTGTTTTTATGGCAGAATGGTCTTGTTGGTGCTATTCCAAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTAAGTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGAGGTCTTTTAGAGCTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCTATTCCTTCAACTCTTTCAAATGCCGAAAAGCTTCAACAGTTGCAAGTTGATACAAATCAGCTTTCAGGTTTGATTCCATCAGAGATTGGAAAGTTGTCAAATCTTCTAGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTAGAAAACTGTAGTAAACTTCAAGCACTTGATTTGTCTAGAAATTCACTCACTGGTAGCATTCCTTCTGGATTATTTCAGCTTCAAAATCTCACAAAATTGCTTCTGATTTCAAATGATATATCTGGTTCTATACCATCAGAAATTGGTAGTTGCATGTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGAAGCATTCCTAAAACCATAGGAAGTCTTAAGAATTTGAACTTTTTAGATCTCTCTGGGAACCGGCTTTCTGGGCCGGTTCCTGATGAAATAAGAAGCTGCATACAACTTCAAATGATTGACTTCAGTACTAACAACTTGGAAGGCTCACTTCCTAATTCCTTGTCGTCATTATCGTCGCTTCAGGTATTGGATGTTTCTTTTAACAAGTTTTCAGGTCCGTTGCCGGCGAGCTTAGGCCGTCTTGTTTCTCTGAGTAAGTTAATCTTAGGGAATAACTTGTTTTCTGGGCCAATTCCTGCATCAATAAGCCTATGTTCAAATCTTCAACTTCTTGATCTTAGTAGCAATCAGCTCACCGGAAGCATACCGGCTGAATTAGGCCAAATCGAAGCTCTAGAAATCGCTCTCAATCTAAGTTGCAATTTACTAAGTGGAACAATACCACCTCAGATATCTGCTCTTAACAAGCTTTCCATATTAGACATTTCACATAACCAGTTAGAAGGAGATTTGCAAACTCTTGCAGAGCTGGATAACCTTGTTTCCCTCAATGTTTCTTACAACAAGTTCACAGGATATCTTCCAGATAACAATCTTTTCAGGCAGTTAACATCGAAAGACCTTACTGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTTATGTTTTGTAAAGGATTCTAGCAAGACCGATATGGCGTTGAATGAGCATGAGGTGAGGAAATCACGGAGGATTAAACTAGCGATTGGACTGCTGATAGCATTAACAGTAGTAATGATACTTATGGGGATAACTGCTGTGGTGAAAGCAAGAAGAACCATTCGAGACGATGATTCGGAATTAGGAGACTCATGGCCATGGCAATTCATACCATTCCAGAAACTAAACTTTTCAGTTGAACAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGCAAGGGATGTTCCGGTGTTGTTTATCGAGGTGAAATGGATAATGGTGAATTCATTGCAGTGAAGAAACTGTGGCCTATAACAACTGATGAAGGAGAGGCATTGAAGGATTACAAAAGTGGAGTTCGAGATTCATTCTCGGCCGAGGTCAAGTGTCTTGGCTCGATTCGTCATAAGAACATTGTCAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTGGATTGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCGGAAGGACTTGCATATCTACATCATGACTGTGTTCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCTTGATTGGCCTTGAATTTGAACCTTATATTGCGGACTTCGGATTAGCTAAGCTTGTTGATGATGGTGATGTTGGTCGTTCTTCCAATACCGTTGCTGGTTCGTATGGATATATTGCTCCAGAATATGGTTATATGATGAAGATTACGGAGAAGAGCGACGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCAATAGATCCAACAATACCAGATGGTTTACATGTTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTACCTTACTTTCAAGACCGGAATCGGAAATAGAAGAAATGATCCAAGCATTGGGAATAGCCCTATTGTGTGTAAATTCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCAGCAATGCTCAAAGAGATAAAACATGAAAGAGAAGAATATGCAAAATTTGATGTGCTTTTAAAAGGGTCTACTGCAAATGATGCTAAAGTTCTTGCAACATCTTCTAATGCATCAGCTTTGCAAAGTTTGAATACAAAAAGCAATAATACAAGCTTCTCTGTGTCTTCATTTCTTCATTCATCTTCAAGTTCCAAATTGAGTTTCAAATGA 3387 0.3732 MLNLSSSSSSSPSSFFCIIILIQTTLFFSFSFSSSNNEAKILFTWLHSSSSKPPSSFSNWNIHDTNPCKWTSITCSSLSFVTEINIQSIPLQLPIPSNLSSFPYLTKLVISDSNLTGTIPFDIGDCSSLTVIDLSFNNLVGSIPSSIGKLENLVNLSLNSNQLTGKIPDEISTCISLRNLHLFDNQLDGSIPNSLGKLSKLEVLRAGGNKDIIGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLQKLQTLSIYTTMLSGEIPKELGNCSELIDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSTLSNAEKLQQLQVDTNQLSGLIPSEIGKLSNLLVFFAWQNQLEGSIPSSLENCSKLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCMSLIRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCIQLQMIDFSTNNLEGSLPNSLSSLSSLQVLDVSFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASISLCSNLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPQISALNKLSILDISHNQLEGDLQTLAELDNLVSLNVSYNKFTGYLPDNNLFRQLTSKDLTGNQGLCTSGQDLCFVKDSSKTDMALNEHEVRKSRRIKLAIGLLIALTVVMILMGITAVVKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEFIAVKKLWPITTDEGEALKDYKSGVRDSFSAEVKCLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDVGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSTANDAKVLATSSNASALQSLNTKSNNTSFSVSSFLHSSSSSKLSFK 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 613 700 IPR032675 -
Trre10g02928 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase 613 698 - -
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 530 612 IPR032675 -
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 150 227 IPR032675 -
Trre10g02928 1128 ProSiteProfiles Leucine-rich repeat profile. 634 656 IPR001611 GO:0005515
Trre10g02928 1128 Gene3D Transferase(Phosphotransferase) domain 1 871 1083 - -
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 37 149 IPR032675 -
Trre10g02928 1128 SMART serkin_6 784 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02928 1128 ProSitePatterns Protein kinases ATP-binding region signature. 790 813 IPR017441 GO:0005524
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 335 430 IPR032675 -
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 233 334 IPR032675 -
Trre10g02928 1128 SUPERFAMILY L domain-like 585 694 - -
Trre10g02928 1128 ProSiteProfiles Protein kinase domain profile. 784 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02928 1128 FunFam Nuclear pore complex protein NUP107 35 192 - -
Trre10g02928 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 210 433 - -
Trre10g02928 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 915 927 IPR008271 GO:0004672|GO:0006468
Trre10g02928 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 434 528 - -
Trre10g02928 1128 Pfam Protein tyrosine and serine/threonine kinase 788 1061 IPR001245 GO:0004672|GO:0006468
Trre10g02928 1128 SMART LRR_typ_2 655 680 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 583 607 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 535 559 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 295 319 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 150 174 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 487 511 IPR003591 -
Trre10g02928 1128 SMART LRR_typ_2 415 439 IPR003591 -
Trre10g02928 1128 SUPERFAMILY RNI-like 263 607 - -
Trre10g02928 1128 PRINTS Leucine-rich repeat signature 487 500 - -
Trre10g02928 1128 PRINTS Leucine-rich repeat signature 418 431 - -
Trre10g02928 1128 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Trre10g02928 1128 SUPERFAMILY L domain-like 55 314 - -
Trre10g02928 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 529 612 - -
Trre10g02928 1128 SUPERFAMILY Protein kinase-like (PK-like) 762 1063 IPR011009 -
Trre10g02928 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 871 1080 - -
Trre10g02928 1128 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 767 870 - -
Trre10g02928 1128 Pfam Leucine rich repeat 103 163 IPR001611 GO:0005515
Trre10g02928 1128 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 291 1064 - -
Trre10g02928 1128 Gene3D Ribonuclease Inhibitor 431 529 IPR032675 -
Trre10g02928 1128 SMART LRR_sd22_2 487 502 - -
Trre10g02928 1128 SMART LRR_sd22_2 391 417 - -
Trre10g02928 1128 SMART LRR_sd22_2 150 173 - -
Trre10g02928 1128 SMART LRR_sd22_2 632 657 - -
Trre10g02928 1128 SMART LRR_sd22_2 295 327 - -
Trre10g02928 1128 SMART LRR_sd22_2 583 604 - -
Trre10g02928 1128 Gene3D Phosphorylase Kinase; domain 1 771 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02928 Trre-Chr10 37887640 37891274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02928 56 1081 Receptor kinase-like Gene Family AT5G56040 49.568 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g02928 PK_Tyr_Ser-Thr 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02928 - - gmx:100818541 1724.14