Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02927 ATGTTTTCATTGTTTTCAATGCTTAACTTATCATCTTCTTCTTCTTCTTCTCCTTCTTCATTCTTTTGTATCATTATTCTCATCCAAACAACACTTTTTTTTAGTTTCTCTTTCTCTTCTTCTAACAATGAAGCCAAAATTCTCTTCACATGGCTTCATAGTTCATCTTCAAAACCACCTTCATCATTCTCTAACTGGAACATCCATGATACTAATCCATGCAAATGGACCTCCATAACATGTTCATCACTCTCTTTTGTAACTGAAATCAATATTCAATCCATTCCTCTTCAACTTCCTATACCTTCCAATCTCTCTTCATTTCCTTATCTTACCAAACTTGTCATTTCTGATTCCAATCTCACTGGTACCATTCCTTTTGACATTGGTGATTGTTCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTTGTTGGTTCTATTCCTTCAAGTATTGGAAAGTTAGAGAATCTAGTGAACTTGTCTTTGAATTCGAACCAACTTACCGGAAAAATTCCGGATGAGATAAGTACTTGCATTAGTCTCAGAAATCTTCACCTTTTTGATAATCAGTTAGATGGAAGTATCCCGAATTCGCTCGGAAAGTTGTCGAAACTTGAAGTACTTAGAGCAGGTGGAAACAAAGATATAATTGGGAAAATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGTCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTTCTTTTGGTAAACTTCAAAAGCTTCAAACTTTGTCAATTTATACAACTATGCTATCAGGTGAAATTCCTAAAGAGTTAGGTAACTGTTCTGAACTTATTGATTTGTTTCTATATGAAAATAGCTTATCAGGATCTATACCATCAGAGATTGGTAAGCTAAAGAAGCTTGAACAGTTGTTTTTATGGCAGAATGGTCTTGTTGGTGCTATTCCAAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTAAGTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGAGGTCTTTTAGAGCTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCTATTCCTTCAACTCTTTCAAATGCCGAAAAGCTTCAACAGTTGCAAGTTGATACAAATCAGCTTTCAGGTTTGATTCCATCAGAGATTGGAAAGTTGTCAAATCTTCTAGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTAGAAAACTGTAGTAAACTTCAAGCACTTGATTTGTCTAGAAATTCACTCACTGGTAGCATTCCTTCTGGATTATTTCAGCTTCAAAATCTCACAAAATTGCTTCTGATTTCAAATGATATATCTGGTTCTATACCATCAGAAATTGGTAGTTGCATGTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGAAGCATTCCTAAAACCATAGGAAGTCTTAAGAATTTGAACTTTTTAGATCTCTCTGGGAACCGGCTTTCTGGGCCGGTTCCTGATGAAATAAGAAGCTGCATACAACTTCAAATGATTGACTTCAGTACTAACAACTTGGAAGGCTCACTTCCTAATTCCTTGTCGTCATTATCGTCGCTTCAGGTATTGGATGTTTCTTTTAACAAGTTTTCAGGTCCGTTGCCGGCGAGCTTAGGCCGTCTTGTTTCTCTGAGTAAGTTAATCTTAGGGAATAACTTGTTTTCTGGGCCAATTCCTGCATCAATAAGCCTATGTTCAAATCTTCAACTTCTTGATCTTAGTAGCAATCAGCTCACCGGAAGCATACCGGCTGAATTAGGCCAAATCGAAGCTCTAGAAATCGCTCTCAATCTAAGTTGCAATTTACTAAGTGGAACAATACCACCTCAGATATCTGCTCTTAACAAGCTTTCCATATTAGACATTTCACATAACCAGTTAGAAGGAGATTTGCAAACTCTTGCAGAGCTGGATAACCTTGTTTCCCTCAATGTTTCTTACAACAAGTTCACAGGATATCTTCCAGATAACAATCTTTTCAGGCAGTTAACATCGAAAGACCTTACTGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTTATGTTTTGTAAAGGATTCTAGCAAGACCGATATGGCGTTGAATGAGCATGAGGTGAGGAAATCACGGAGGATTAAACTAGCGATTGGACTGCTGATAGCATTAACAGTAGTAATGATACTTATGGGGATAACTGCTGTGGTGAAAGCAAGAAGAACCATTCGAGACGATGATTCGGAATTAGGAGACTCATGGCCATGGCAATTCATACCATTCCAGAAACTAAACTTTTCAGTTGAACAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGCAAGGGATGTTCCGGTGTTGTTTATCGAGGTGAAATGGATAATGGTGAATTCATTGCAGTGAAGAAACTGTGGCCTATAACAACTGATGAAGGAGAGGCATTGAAGGATTACAAAAGTGGAGTTCGAGATTCATTCTCGGCCGAGGTCAAGTGTCTTGGCTCGATTCGTCATAAGAACATTGTCAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTGGATTGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCGGAAGGACTTGCATATCTACATCATGACTGTGTTCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCTTGATTGGCCTTGAATTTGAACCTTATATTGCGGACTTCGGATTAGCTAAGCTTGTTGATGATGGTGATGTTGGTCGTTCTTCCAATACCGTTGCTGGTTCGTATGGATATATTGCTCCAGAATATGGTTATATGATGAAGATTACGGAGAAGAGCGACGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCAATAGATCCAACAATACCAGATGGTTTACATGTTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTACCTTACTTTCAAGACCGGAATCGGAAATAGAAGAAATGATCCAAGCATTGGGAATAGCCCTATTGTGTGTAAATTCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCAGCAATGCTCAAAGAGATAAAACATGAAAGAGAAGAATATGCAAAATTTGATGTGCTTTTAAAAGGGTCTACTGCAAATGATGCTAAAGTTCTTGCAACATCTTCTAATGCATCAGCTTTGCAAAGTTTGAATACAAAAAGCAATAATACAAGCTTCTCTGTGTCTTCATTTCTTCATTCATCTTCAAGTTCCAAATTGAGTTTCAAATGA 3405 0.3724 MFSLFSMLNLSSSSSSSPSSFFCIIILIQTTLFFSFSFSSSNNEAKILFTWLHSSSSKPPSSFSNWNIHDTNPCKWTSITCSSLSFVTEINIQSIPLQLPIPSNLSSFPYLTKLVISDSNLTGTIPFDIGDCSSLTVIDLSFNNLVGSIPSSIGKLENLVNLSLNSNQLTGKIPDEISTCISLRNLHLFDNQLDGSIPNSLGKLSKLEVLRAGGNKDIIGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLQKLQTLSIYTTMLSGEIPKELGNCSELIDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSTLSNAEKLQQLQVDTNQLSGLIPSEIGKLSNLLVFFAWQNQLEGSIPSSLENCSKLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCMSLIRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCIQLQMIDFSTNNLEGSLPNSLSSLSSLQVLDVSFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASISLCSNLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPQISALNKLSILDISHNQLEGDLQTLAELDNLVSLNVSYNKFTGYLPDNNLFRQLTSKDLTGNQGLCTSGQDLCFVKDSSKTDMALNEHEVRKSRRIKLAIGLLIALTVVMILMGITAVVKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEFIAVKKLWPITTDEGEALKDYKSGVRDSFSAEVKCLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDVGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSTANDAKVLATSSNASALQSLNTKSNNTSFSVSSFLHSSSSSKLSFK 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 437 535 IPR032675 -
Trre10g02927 1134 SUPERFAMILY L domain-like 438 699 - -
Trre10g02927 1134 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 535 618 - -
Trre10g02927 1134 SUPERFAMILY L domain-like 219 506 - -
Trre10g02927 1134 Pfam Leucine rich repeat 109 169 IPR001611 GO:0005515
Trre10g02927 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Trre10g02927 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 216 439 - -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 155 233 IPR032675 -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 536 618 IPR032675 -
Trre10g02927 1134 SMART LRR_sd22_2 638 663 - -
Trre10g02927 1134 SMART LRR_sd22_2 397 423 - -
Trre10g02927 1134 SMART LRR_sd22_2 301 333 - -
Trre10g02927 1134 SMART LRR_sd22_2 156 179 - -
Trre10g02927 1134 SMART LRR_sd22_2 589 610 - -
Trre10g02927 1134 SMART LRR_sd22_2 493 508 - -
Trre10g02927 1134 Gene3D Phosphorylase Kinase; domain 1 777 876 - -
Trre10g02927 1134 SUPERFAMILY Protein kinase-like (PK-like) 768 1069 IPR011009 -
Trre10g02927 1134 ProSitePatterns Protein kinases ATP-binding region signature. 796 819 IPR017441 GO:0005524
Trre10g02927 1134 SMART LRR_typ_2 541 565 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 301 325 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 493 517 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 421 445 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 661 686 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 589 613 IPR003591 -
Trre10g02927 1134 SMART LRR_typ_2 156 180 IPR003591 -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 619 706 IPR032675 -
Trre10g02927 1134 Gene3D Transferase(Phosphotransferase) domain 1 877 1089 - -
Trre10g02927 1134 SUPERFAMILY L domain-like 70 280 - -
Trre10g02927 1134 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Trre10g02927 1134 FunFam Putative LRR receptor-like serine/threonine-protein kinase 619 704 - -
Trre10g02927 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 297 1070 - -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 43 154 IPR032675 -
Trre10g02927 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 440 534 - -
Trre10g02927 1134 SMART serkin_6 790 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02927 1134 ProSiteProfiles Leucine-rich repeat profile. 640 662 IPR001611 GO:0005515
Trre10g02927 1134 Pfam Protein tyrosine and serine/threonine kinase 794 1067 IPR001245 GO:0004672|GO:0006468
Trre10g02927 1134 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 773 876 - -
Trre10g02927 1134 PRINTS Leucine-rich repeat signature 493 506 - -
Trre10g02927 1134 PRINTS Leucine-rich repeat signature 424 437 - -
Trre10g02927 1134 FunFam Nuclear pore complex protein NUP107 41 198 - -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 239 340 IPR032675 -
Trre10g02927 1134 Gene3D Ribonuclease Inhibitor 341 436 IPR032675 -
Trre10g02927 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 877 1086 - -
Trre10g02927 1134 ProSiteProfiles Protein kinase domain profile. 790 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02927 Trre-Chr10 37887622 37891274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02927 62 1087 Receptor kinase-like Gene Family AT5G56040 49.568 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g02927 PK_Tyr_Ser-Thr 6.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02927 - - gmx:100818541 1724.14