Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02905 ATGATCAACAACAATAATAATATTGGTGGTGGTTCAAAGGGAGGGACAACAAAGAAGAAAAAGAAAATTATAAAATCTGAACAACATCAACTTTCAAATTTTAAGAATGATTTTATTATTGGGTCGAAGGTACGAACTTTTTCTTGCAAGTTTTGCAAGAAACAGTATTCTTCTCCACATGCATTAGCTGGACATCAAAACACTTTTAAGAAAGAGCGTGCTCGTGAAAAACATCTTCCAAAATTTAAGAAATCATTGAGGAGCTTATCATAA 273 0.3187 MINNNNNIGGGSKGGTTKKKKKIIKSEQHQLSNFKNDFIIGSKVRTFSCKFCKKQYSSPHALAGHQNTFKKERAREKHLPKFKKSLRSLS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02905 90 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 78 IPR044246 GO:0009788
Trre10g02905 90 SUPERFAMILY beta-beta-alpha zinc fingers 32 72 IPR036236 -
Trre10g02905 90 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Trre10g02905 90 MobiDBLite consensus disorder prediction 67 90 - -
Trre10g02905 90 MobiDBLite consensus disorder prediction 1 24 - -
Trre10g02905 90 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02905 Trre-Chr10 37682439 37682711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02905 42 77 C2H2 Transcription Factor Family AT5G01860 52.778 8.35e-08 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02905 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02905 - - tpra:123896691 81.2629