Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02896 ATGGATAGTTCTAATAAGATGATGGATTGTGGTAGTAGTGTTGGTGAGTTTATTGAAGTTGACAAGTTTCAAGATGATGGTGCATCTTGGGAGCCTGCAACGGACATGTGTTTTTCTTTTGTGGATGATGTTAAATCTTTTTATGCCGAGTATGCTTTGAGAAAGGGGTTTGGGTGGAGGATTAGAACATCTAAAAAAGAAGACGGAGAACTATGCTACTTGGTTCTAGTATGCGCAAGAGAGAGGAATAATGTCTCAAATGTTCCATGTACATTGAAGACACTTCCGACAAAGGTGAAGCAATGTCCGGCTAGGATTTGTATTAAGATGGAAGCAGATGGATTGTGGTACATCAATAAATTTGTTTCTACCCATTCTCACGATTGCAGCCCTACAAAGGCAAGGTTGTTCAAGGTTAACAAGAAAATGAACTTGCATGTGCAGAGGGCAATCACAATCAATGATGATGCAGGAGTGACGATCAACAAAACTTTTCAATCTCTTGTTAAAGATGCGGGTGGACATGAAAACATTCCGTTTTGTGAAAGAGACGTGCGAAATTATGTTAACAAGGAACGCCGTGCTATTGGAAAAGAAGGCGACGGGCAGGCTCTGCTAATCTATTTTAATCAAATGAGGGAACAAAATGCAAATTTCTTCTACGAGATAGATGTAGACGAAGAATTTCATTTAAAAAATGTGTTTTGGGCCGATGCAAGAAGTAGAGCTGCTTACGAGTATTTTGGAGATGTTGTCACTTTCGACAGAACATATTTGGTTAACAAATACGACATGCCTTTTGCTGTGTTTGTTGGTGTGAATCACCATGGTCAATCGACATTACTTGGATGCGGGTTGGTTTCGGGGGAGGACACGGAATCATTTGTATGGCTATTCAAGTCATGGCTTCGTTGTATGCTAGGAAAGGCCCCCGTTGGTATTATAACTGACCAATGTAAGGCTATGGAAAATGTCATTGAGTTAGTGTTCCCTACAACACGCCATAGGTGGTGTTTATGGCATATAATGAAGAAAATTCCTGAAAAACTTAGCCGCTGCAGTGCGTATATAAACATCAAGGCTGCTATGAAAGAAGCTGTTTACGATACATACGCAACAACTGCTTTTGAAGAGAAATGGTGTACCTTCATAGACAAATTTGAGCTTCAGCAGAATAACTGGTTGAGTGGGTTGTATAATGAGCGTCATAGATGGGTACCAACCTTGTTAAGGAAGCATTTTTGGGCGGGTATGTCAACTACGCAACGAAGTGAAAGTATAAATGCTTTCTTTGACGGGTATATCAATTCCACAACAACTTTACGTCAGTTTGTGAAACAATATGACAATGCCCTTAGAAGTCGAGCAGAAAAAGAAAATACCAATTGCGCGATGATAGGGATGCCACGTCACATGCTGAATTTGATCATACAAAAGCAAATACCAATTGCCACAACTATTTTCCCTGTGGGATGTTATTTATTCCCTCTCTCCAACCTAGATTATACTCTAACCAAAACATTCCTTAAGTTGAATTTATGA 1542 0.3975 MDSSNKMMDCGSSVGEFIEVDKFQDDGASWEPATDMCFSFVDDVKSFYAEYALRKGFGWRIRTSKKEDGELCYLVLVCARERNNVSNVPCTLKTLPTKVKQCPARICIKMEADGLWYINKFVSTHSHDCSPTKARLFKVNKKMNLHVQRAITINDDAGVTINKTFQSLVKDAGGHENIPFCERDVRNYVNKERRAIGKEGDGQALLIYFNQMREQNANFFYEIDVDEEFHLKNVFWADARSRAAYEYFGDVVTFDRTYLVNKYDMPFAVFVGVNHHGQSTLLGCGLVSGEDTESFVWLFKSWLRCMLGKAPVGIITDQCKAMENVIELVFPTTRHRWCLWHIMKKIPEKLSRCSAYINIKAAMKEAVYDTYATTAFEEKWCTFIDKFELQQNNWLSGLYNERHRWVPTLLRKHFWAGMSTTQRSESINAFFDGYINSTTTLRQFVKQYDNALRSRAEKENTNCAMIGMPRHMLNLIIQKQIPIATTIFPVGCYLFPLSNLDYTLTKTFLKLNL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02896 513 Pfam MULE transposase domain 251 345 IPR018289 -
Trre10g02896 513 Pfam FAR1 DNA-binding domain 46 130 IPR004330 -
Trre10g02896 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 461 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02896 Trre-Chr10 37629690 37631231 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g02896 MULE 1.2e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02896 - - psat:127087122 752.281